fork/cellxgene-gateway
1
0
Fork 0
mirror of https://github.com/Novartis/cellxgene-gateway.git synced 2026-09-15 12:47:59 +08:00
Code Issues Packages Projects Releases Wiki Activity

Sorry -- forgot to lint

Browse Source
This commit is contained in:
george-hall-ucl
2023-08-08 16:04:03 +01:00
parent 56bd079024
commit 19caa6cb80
1 changed files with 8 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
cellxgene_gateway/items/file/fileitem_source.py
View File

@@ -197,13 +197,18 @@ class FileItemSource(ItemSource):
# Catch gene sets without accompanying [annotations].csv
gene_sets_files = [
self.make_fileitem_from_path(annotation[:-len(self.gene_set_file_suffix)] + ".csv", annotations_subpath, True)
self.make_fileitem_from_path(
annotation[: -len(self.gene_set_file_suffix)] + ".csv",
annotations_subpath,
True,
)
for annotation in sorted_files
if self.is_gene_set(annotation)
and annotation[:-len(self.gene_set_file_suffix)] not in [a.name for a in annotation_files]
and annotation[: -len(self.gene_set_file_suffix)]
not in [a.name for a in annotation_files]
and os.path.isfile(os.path.join(annotations_fullpath, annotation))
]
return sorted(annotation_files + gene_sets_files, key = lambda x: x.name)
return sorted(annotation_files + gene_sets_files, key=lambda x: x.name)
else:
return None