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Sorry -- forgot to lint

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george-hall-ucl
2023-08-08 16:04:03 +01:00
parent 56bd079024
commit 19caa6cb80
1 changed files with 8 additions and 3 deletions
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cellxgene_gateway/items/file/fileitem_source.py
+8 -3
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@@ -197,13 +197,18 @@ class FileItemSource(ItemSource):
# Catch gene sets without accompanying [annotations].csv # Catch gene sets without accompanying [annotations].csv
gene_sets_files = [ gene_sets_files = [
self.make_fileitem_from_path(annotation[:-len(self.gene_set_file_suffix)] + ".csv", annotations_subpath, True) self.make_fileitem_from_path(
annotation[: -len(self.gene_set_file_suffix)] + ".csv",
annotations_subpath,
True,
)
for annotation in sorted_files for annotation in sorted_files
if self.is_gene_set(annotation) if self.is_gene_set(annotation)
and annotation[:-len(self.gene_set_file_suffix)] not in [a.name for a in annotation_files] and annotation[: -len(self.gene_set_file_suffix)]
not in [a.name for a in annotation_files]
and os.path.isfile(os.path.join(annotations_fullpath, annotation)) and os.path.isfile(os.path.join(annotations_fullpath, annotation))
] ]
return sorted(annotation_files + gene_sets_files, key = lambda x: x.name) return sorted(annotation_files + gene_sets_files, key=lambda x: x.name)
else: else:
return None return None