diff --git a/Readme.md b/Readme.md index 1bb29aa..e9eafa7 100644 --- a/Readme.md +++ b/Readme.md @@ -4,6 +4,10 @@ Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zu # Running locally # +0. This project requires python 3.6 or higher. Please check your version with + + python --version + 1. Set up a venv with python -m venv .cellxgene-gateway @@ -18,11 +22,9 @@ Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zu mkdir cellxgene_data wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad -4. Copy run.sh.example to run.sh and edit if you want to change venv or .h5ad folder position: +4. Copy run.sh.example to run.sh: -``` -cp run.sh.example run.sh -``` + cp run.sh.example run.sh `run.sh` defines various environment variables: