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#81 Combined GATEWAY_ENABLE_ANNOTATIONS and GATEWAY_ENABLE_GENE_SETS flags

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Alok Saldanha
2023-07-06 08:53:19 -06:00
parent 5a650334df
commit 2754bc1ef1
7 changed files with 8 additions and 24 deletions
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README.md
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@@ -75,8 +75,7 @@ Optional environment variables:
* `GATEWAY_PORT` - local port that the gateway should bind to, defaults to 5005
* `GATEWAY_EXPIRE_SECONDS` - time in seconds that a cellxgene process will remain idle before being terminated. Defaults to 3600 (one hour)
* `GATEWAY_EXTRA_SCRIPTS` - JSON array of script paths, will be embedded into each page and forwarded with `--scripts` to cellxgene server
* `GATEWAY_ENABLE_ANNOTATIONS` - Set to `true` or to `1` to enable cellxgene annotations.
* `GATEWAY_ENABLE_GENE_SETS` - Set to `true` or to `1` to enable cellxgene gene sets. Also enables `GATEWAY_ENABLE_ANNOTATIONS`.
* `GATEWAY_ENABLE_ANNOTATIONS` - Set to `true` or to `1` to enable cellxgene annotations and gene sets.
* `GATEWAY_ENABLE_BACKED_MODE` - Set to `true` or to `1` to load AnnData in file-backed mode. This saves memory and speeds up launch time but may reduce overall performance.
* `GATEWAY_LOG_LEVEL` - default is `INFO`. set to `DEBUG` to increase logging and to `WARNING` to decrease logging.
* `S3_ENABLE_LISTINGS_CACHE` - Set to `true` or to `1` to cache listings of S3 folders for performance. If the cache becomes stale, set `filecrawl.html?refresh=true` query parameter to refresh the cache.