diff --git a/Readme.md b/Readme.md index b997f34..f0a9de2 100644 --- a/Readme.md +++ b/Readme.md @@ -10,24 +10,24 @@ Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zu 1. Set up a venv with ``` - python -m venv .cellxgene-gateway - source .cellxgene-gateway/bin/activate +python -m venv .cellxgene-gateway +source .cellxgene-gateway/bin/activate ``` 2. Install requirements with ``` - pip install -r requirements.txt +pip install -r requirements.txt ``` 3. Prepare a folder with .h5ad files, for example ``` - mkdir cellxgene_data - wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad +mkdir cellxgene_data +wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad ``` 4. Copy run.sh.example to run.sh: ``` - cp run.sh.example run.sh +cp run.sh.example run.sh ``` `run.sh` defines various environment variables: