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https://github.com/Novartis/cellxgene-gateway.git
synced 2026-10-10 07:10:56 +08:00
#24 make static paths relative
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@@ -12,13 +12,13 @@ import datetime
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from flask import make_response, request, render_template
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from flask import make_response, request, render_template
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from requests import get, post, put
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from requests import get, post, put
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import re
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from cellxgene_gateway import env
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from cellxgene_gateway import env
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from cellxgene_gateway.cellxgene_exception import CellxgeneException
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from cellxgene_gateway.cellxgene_exception import CellxgeneException
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from cellxgene_gateway.util import current_time_stamp
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from cellxgene_gateway.util import current_time_stamp
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from cellxgene_gateway.flask_util import querystring
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from cellxgene_gateway.flask_util import querystring
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class CacheEntry:
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class CacheEntry:
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def __init__(
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def __init__(
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self,
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self,
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@@ -97,8 +97,20 @@ class CacheEntry:
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)
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)
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self.status = "terminated"
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self.status = "terminated"
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def rewrite_text_content(self, cellxgene_content):
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# for v0.16.0 compatibility, see issue #24
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gateway_content = re.sub('(="|\()/static/', r'\1static/', cellxgene_content).replace(
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"http://fonts.gstatic.com", "https://fonts.gstatic.com"
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).replace(self.cellxgene_basepath(), self.gateway_basepath())
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return gateway_content
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def gateway_basepath(self):
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return f"{env.external_protocol}://{env.external_host}/view/{self.key.pathpart}/"
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def cellxgene_basepath(self):
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return f"http://127.0.0.1:{self.port}"
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def serve_content(self, path):
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def serve_content(self, path):
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gateway_basepath = f"{env.external_protocol}://{env.external_host}/view/{self.key.pathpart}/"
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gateway_basepath = self.gateway_basepath()
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subpath = path[len(self.key.pathpart) :] # noqa: E203
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subpath = path[len(self.key.pathpart) :] # noqa: E203
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if len(subpath) == 0:
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if len(subpath) == 0:
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@@ -113,8 +125,6 @@ class CacheEntry:
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all_output=self.all_output,
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all_output=self.all_output,
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)
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)
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port = self.port
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cellxgene_basepath = f"http://127.0.0.1:{port}"
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headers = {}
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headers = {}
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copy_headers = [
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copy_headers = [
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"accept",
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"accept",
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@@ -137,7 +147,7 @@ class CacheEntry:
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if h in request.headers:
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if h in request.headers:
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headers[h] = request.headers[h]
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headers[h] = request.headers[h]
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full_path = cellxgene_basepath + subpath + querystring()
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full_path = self.cellxgene_basepath() + subpath + querystring()
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if request.method in ["GET", "HEAD", "OPTIONS"]:
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if request.method in ["GET", "HEAD", "OPTIONS"]:
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cellxgene_response = get(full_path, headers=headers)
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cellxgene_response = get(full_path, headers=headers)
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@@ -155,10 +165,7 @@ class CacheEntry:
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)
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)
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content_type = cellxgene_response.headers["content-type"]
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content_type = cellxgene_response.headers["content-type"]
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if "text" in content_type:
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if "text" in content_type:
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cellxgene_content = cellxgene_response.content.decode()
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gateway_content = self.rewrite_text_content(cellxgene_response.content.decode())
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gateway_content = cellxgene_content.replace(
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"http://fonts.gstatic.com", "https://fonts.gstatic.com"
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).replace(cellxgene_basepath, gateway_basepath)
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else:
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else:
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gateway_content = cellxgene_response.content
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gateway_content = cellxgene_response.content
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@@ -7,13 +7,6 @@
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# OR CONDITIONS OF ANY KIND, either express or implied. See the License for
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# OR CONDITIONS OF ANY KIND, either express or implied. See the License for
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# the specific language governing permissions and limitations under the License.
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# the specific language governing permissions and limitations under the License.
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import os
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from flask_api import status
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from cellxgene_gateway import env
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from cellxgene_gateway.cellxgene_exception import CellxgeneException
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# There are three kinds of CacheKey:
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# There are three kinds of CacheKey:
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# 1) somedir/dataset.h5ad: a dataset
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# 1) somedir/dataset.h5ad: a dataset
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# in this case, pathpart == dataset == 'somedir/dataset.h5ad'
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# in this case, pathpart == dataset == 'somedir/dataset.h5ad'
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@@ -0,0 +1,16 @@
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import unittest
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from cellxgene_gateway.cache_entry import CacheEntry
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from cellxgene_gateway.cache_key import CacheKey
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key = CacheKey('path/part', 'dataset', 'tmp.csv')
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class TestRenderEntry(unittest.TestCase):
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def test_GIVEN_absolute_static_url_THEN_return_relative(self):
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actual = CacheEntry.for_key(key, 8000).rewrite_text_content("src:url(/static/assets/")
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expected = "src:url(static/assets/"
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self.assertEqual(actual, expected)
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def test_GIVEN_absolute_src_THEN_return_relative(self):
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actual = CacheEntry.for_key(key, 8000).rewrite_text_content('<link rel="shortcut icon" href="/static/assets/favicon.ico">')
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expected = '<link rel="shortcut icon" href="static/assets/favicon.ico">'
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self.assertEqual(actual, expected)
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