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prepared for 0.2.1 release

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updated docs
made GATEWAY_IP optional
This commit is contained in:
Alok Saldanha
2020-08-18 20:02:24 -04:00
parent 13802b72b9
commit 5349df36e8
4 changed files with 10 additions and 5 deletions
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Changelog.md
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@@ -1,3 +1,9 @@
# 0.2.1
* Minor fixes to enable cellxgene 0.16.0
* Added CELLXGENE_ARGS to enable passing additional arguments to cellxgene
* added metadata/ip_address endpoint
# 0.2.0 # 0.2.0
Incrementing minor version since the changes for 0.15 are breaking, and we may want to release bugfixes from 0.1.0 branch. Incrementing minor version since the changes for 0.15 are breaking, and we may want to release bugfixes from 0.1.0 branch.
README.md
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@@ -30,7 +30,7 @@ Note: you may need to downgrade h5py with `pip install h5py==2.9.0` due to an [i
### Option 2: Install from PyPI ### Option 2: Install from PyPI
```bash ```bash
# NOT YET DONE, COMING! STAY TUNED pip install cellxgene-gateway
``` ```
## Running cellxgene gateway ## Running cellxgene gateway
cellxgene_gateway/__init__.py
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@@ -7,4 +7,4 @@
# OR CONDITIONS OF ANY KIND, either express or implied. See the License for # OR CONDITIONS OF ANY KIND, either express or implied. See the License for
# the specific language governing permissions and limitations under the License. # the specific language governing permissions and limitations under the License.
__version__ = "0.2.0" __version__ = "0.2.1"
cellxgene_gateway/env.py
+2 -3
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@@ -22,7 +22,7 @@ external_host = os.environ.get(
external_protocol = os.environ.get( external_protocol = os.environ.get(
"EXTERNAL_PROTOCOL", os.environ.get("GATEWAY_PROTOCOL", "http") "EXTERNAL_PROTOCOL", os.environ.get("GATEWAY_PROTOCOL", "http")
) )
ip = os.environ.get("GATEWAY_IP") ip = os.environ.get("GATEWAY_IP", "127.0.0.1")
extra_scripts = os.environ.get("GATEWAY_EXTRA_SCRIPTS") extra_scripts = os.environ.get("GATEWAY_EXTRA_SCRIPTS")
ttl = os.environ.get("GATEWAY_TTL") ttl = os.environ.get("GATEWAY_TTL")
enable_upload = os.environ.get("GATEWAY_ENABLE_UPLOAD", "").lower() in [ enable_upload = os.environ.get("GATEWAY_ENABLE_UPLOAD", "").lower() in [
@@ -39,12 +39,12 @@ enable_backed_mode = os.environ.get(
env_vars = { env_vars = {
"CELLXGENE_LOCATION": cellxgene_location, "CELLXGENE_LOCATION": cellxgene_location,
"CELLXGENE_DATA": cellxgene_data, "CELLXGENE_DATA": cellxgene_data,
"GATEWAY_IP": ip,
} }
optional_env_vars = { optional_env_vars = {
"EXTERNAL_HOST": external_host, "EXTERNAL_HOST": external_host,
"EXTERNAL_PROTOCOL": external_protocol, "EXTERNAL_PROTOCOL": external_protocol,
"GATEWAY_IP": ip,
"GATEWAY_PORT": gateway_port, "GATEWAY_PORT": gateway_port,
"GATEWAY_EXTRA_SCRIPTS": extra_scripts, "GATEWAY_EXTRA_SCRIPTS": extra_scripts,
"GATEWAY_TTL": ttl, "GATEWAY_TTL": ttl,
@@ -69,7 +69,6 @@ def validate():
export CELLXGENE_LOCATION=~/anaconda/envs/cellxgene-dev/bin/cellxgene export CELLXGENE_LOCATION=~/anaconda/envs/cellxgene-dev/bin/cellxgene
export CELLXGENE_DATA=../cellxgene_data export CELLXGENE_DATA=../cellxgene_data
export GATEWAY_IP=127.0.0.1
""" """
) )
else: else: