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This commit is contained in:
Alok Saldanha
2025-11-08 17:23:47 -05:00
parent 4df58f9ceb
commit 55b268125f
3 changed files with 25 additions and 16 deletions
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cellxgene_gateway/gateway.py
+20 -14
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@@ -93,14 +93,18 @@ def _init_on_first_wsgi_request(wsgi_app):
if not data_sources_initialized:
with data_sources_init_lock:
if not app.extensions.get("cellxgene_gateway", {}).get("launchtime"):
app.extensions.setdefault("cellxgene_gateway", {})["launchtime"] = current_time_stamp()
app.extensions.setdefault("cellxgene_gateway", {})[
"launchtime"
] = current_time_stamp()
if not data_sources_initialized:
initialize_data_sources()
env.validate()
if not item_sources or not len(item_sources):
raise Exception("No data sources specified for Cellxgene Gateway")
raise Exception(
"No data sources specified for Cellxgene Gateway"
)
global default_item_source
if default_item_source is None:
@@ -318,24 +322,21 @@ def do_GET_status_json():
dataset = entry.key.h5ad_item.descriptor
annotation_file = entry.key.annotation_descriptor
return {
"dataset": dataset,
"annotation_file": annotation_file,
"launchtime": entry.launchtime,
"last_access": entry.timestamp,
"status": entry.status.name,
}
"dataset": dataset,
"annotation_file": annotation_file,
"launchtime": entry.launchtime,
"last_access": entry.timestamp,
"status": entry.status.name,
}
return json.dumps(
{
"launchtime": app.extensions.get("cellxgene_gateway", {}).get("launchtime"),
"entry_list": [
map_entry(entry)
for entry in cache.entry_list
],
"entry_list": [map_entry(entry) for entry in cache.entry_list],
}
)
def get_cache_key(path):
if request.args.get("source_name"):
source_name = request.args.get("source_name")
@@ -374,6 +375,7 @@ def ip_address():
resp = make_response(env.ip)
return set_no_cache(resp)
def start_pruner_thread():
pruner = PruneProcessCache(cache)
@@ -384,11 +386,15 @@ def start_pruner_thread():
def launch():
start_pruner_thread()
app.extensions.setdefault("cellxgene_gateway", {})["launchtime"] = current_time_stamp()
app.extensions.setdefault("cellxgene_gateway", {})[
"launchtime"
] = current_time_stamp()
app.run(host="0.0.0.0", port=env.gateway_port, debug=False)
app.extensions.setdefault("cellxgene_gateway", {})["launchtime"] = None
def main():
"""CLI entry point for Flask development server."""
launch()