diff --git a/Readme.md b/Readme.md
index 6237aed..da71c39 100644
--- a/Readme.md
+++ b/Readme.md
@@ -6,13 +6,13 @@ Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zu
## Prequisites
-0. This project requires python 3.6 or higher. Please check your version with
+1. This project requires python 3.6 or higher. Please check your version with
```bash
$ python --version
```
-1. It is also a good idea to set up a venv
+2. It is also a good idea to set up a venv
```bash
python -m venv .cellxgene-gateway
@@ -33,31 +33,6 @@ pip install git+https://github.com/Novartis/cellxgene-gateway
# NOT YET DONE, COMING! STAY TUNED
```
-### Option 3: Developer Install
-
-If you want to develop the code, you will need to clone the repo.
-
-1. Clone the repo
-
-```bash
- git clone https://github.com/Novartis/cellxgene-gateway.git
- cd cellxgene-gateway
-```
-
-2. Install requirements with
-
-```bash
-pip install -r requirements.txt
-```
-
-3. Install the gateway in developer mode
-
-```bash
-python setup.py develop
-```
-
-For convenience, the code repo includes a `run.sh.example` shell script to run the gateway.
-
## Running cellxgene gateway
1. Prepare a folder with .h5ad files, for example
@@ -71,8 +46,8 @@ wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc
2. Set your environment variables correctly:
```bash
-export CELLXGENE_LOCATION=`which cellxgene`
export CELLXGENE_DATA=../cellxgene_data # change this directory if you put data in a different place.
+export CELLXGENE_LOCATION=`which cellxgene`
export GATEWAY_HOST=localhost:5005
export GATEWAY_PROTOCOL=http
export GATEWAY_IP=127.0.0.1
@@ -106,6 +81,31 @@ Currently we use a build.sh that copies the gateway to a "build" directory befor
# Development
+## Developer Install
+
+If you want to develop the code, you will need to clone the repo. Make sure you have the prequesite listed above, then:
+
+1. Clone the repo
+
+```bash
+ git clone https://github.com/Novartis/cellxgene-gateway.git
+ cd cellxgene-gateway
+```
+
+2. Install requirements with
+
+```bash
+pip install -r requirements.txt
+```
+
+3. Install the gateway in developer mode
+
+```bash
+python setup.py develop
+```
+
+For convenience, the code repo includes a `run.sh.example` shell script to run the gateway.
+
## Running Linters
pip install isort flake8 black
diff --git a/cellxgene_gateway/templates/filecrawl.html b/cellxgene_gateway/templates/filecrawl.html
index acdf372..a52ef25 100644
--- a/cellxgene_gateway/templates/filecrawl.html
+++ b/cellxgene_gateway/templates/filecrawl.html
@@ -25,7 +25,7 @@
-