From 6a2bc409db4237a56d30258827adce21718a8d1d Mon Sep 17 00:00:00 2001
From: Alok Saldanha <alok@Aloks-MacBook-Air.local>
Date: Sun, 3 Mar 2024 07:45:47 -0500
Subject: [PATCH] Prepare for 0.3.12 release

---
 Changelog.md                            | 8 ++++++++
 cellxgene_gateway/__init__.py           | 2 +-
 cellxgene_gateway/subprocess_backend.py | 6 +-----
 environment.yml                         | 4 ++--
 4 files changed, 12 insertions(+), 8 deletions(-)

diff --git a/Changelog.md b/Changelog.md
index 5f156ae..cd46049 100644
--- a/Changelog.md
+++ b/Changelog.md
@@ -1,3 +1,11 @@
+# 0.3.12
+
+* #81 List gene set annotations when cell annotations not present
+* #86 Upgrade pip within docker image
+* #73 Moved new link to front
+* #87 Temporarily pin versions of werkzeug and flask
+
+
 # 0.3.11
 
 * #81 added support for gene sets
diff --git a/cellxgene_gateway/__init__.py b/cellxgene_gateway/__init__.py
index 91ca8c9..88a893e 100644
--- a/cellxgene_gateway/__init__.py
+++ b/cellxgene_gateway/__init__.py
@@ -7,4 +7,4 @@
 # OR CONDITIONS OF ANY KIND, either express or implied. See the License for
 # the specific language governing permissions and limitations under the License.
 
-__version__ = "0.3.11"
+__version__ = "0.3.12"
diff --git a/cellxgene_gateway/subprocess_backend.py b/cellxgene_gateway/subprocess_backend.py
index 0dc87be..e6c0e2c 100644
--- a/cellxgene_gateway/subprocess_backend.py
+++ b/cellxgene_gateway/subprocess_backend.py
@@ -14,11 +14,7 @@ from flask_api import status
 
 from cellxgene_gateway.cache_entry import CacheEntryStatus
 from cellxgene_gateway.dir_util import make_annotations
-from cellxgene_gateway.env import (
-    cellxgene_args,
-    enable_annotations,
-    enable_backed_mode,
-)
+from cellxgene_gateway.env import cellxgene_args, enable_annotations, enable_backed_mode
 from cellxgene_gateway.process_exception import ProcessException
 
 logger = logging.getLogger(__name__)
diff --git a/environment.yml b/environment.yml
index 0753cdb..ea69593 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,7 +4,7 @@ channels:
 dependencies:
 - python=3.9
 - requests
-- flask==2.2.2
+- flask==2.2.5
 - psutil
 - black
 - twine
@@ -14,5 +14,5 @@ dependencies:
 - pip:
   - pre_commit
   - flask-api
-  - werkzeug==2.3.0
+  - werkzeug==2.3.8
   - cellxgene