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rebased "Introduction of ItemSource interface" patch

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This commit is contained in:
Alok Saldanha
2021-03-28 22:05:08 -04:00
parent 5404a8b0f3
commit 76f3939fdd
24 changed files with 849 additions and 497 deletions
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cellxgene_gateway/env.py
+3 -8
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@@ -12,7 +12,7 @@ import os
import socket
cellxgene_location = os.environ.get("CELLXGENE_LOCATION")
cellxgene_data = os.environ.get("CELLXGENE_DATA")
cellxgene_data = os.environ.get("CELLXGENE_DATA", "")
cellxgene_args = os.environ.get("CELLXGENE_ARGS", None)
gateway_port = int(os.environ.get("GATEWAY_PORT", "5005"))
external_host = os.environ.get(
@@ -22,13 +22,9 @@ external_host = os.environ.get(
external_protocol = os.environ.get(
"EXTERNAL_PROTOCOL", os.environ.get("GATEWAY_PROTOCOL", "http")
)
ip = os.environ.get("GATEWAY_IP", "127.0.0.1")
ip = os.environ.get("GATEWAY_IP")
extra_scripts = os.environ.get("GATEWAY_EXTRA_SCRIPTS")
ttl = os.environ.get("GATEWAY_TTL")
enable_upload = os.environ.get("GATEWAY_ENABLE_UPLOAD", "").lower() in [
"true",
"1",
]
enable_annotations = os.environ.get("GATEWAY_ENABLE_ANNOTATIONS", "").lower() in [
"true",
"1",
@@ -40,7 +36,6 @@ enable_backed_mode = os.environ.get("GATEWAY_ENABLE_BACKED_MODE", "").lower() in
env_vars = {
"CELLXGENE_LOCATION": cellxgene_location,
"CELLXGENE_DATA": cellxgene_data,
}
proxy_fix_for = int(os.environ.get("PROXY_FIX_FOR", "0"))
@@ -56,10 +51,10 @@ optional_env_vars = {
"GATEWAY_PORT": gateway_port,
"GATEWAY_EXTRA_SCRIPTS": extra_scripts,
"GATEWAY_TTL": ttl,
"GATEWAY_ENABLE_UPLOAD": enable_upload,
"GATEWAY_ENABLE_ANNOTATIONS": enable_annotations,
"GATEWAY_ENABLE_BACKED_MODE": enable_backed_mode,
"CELLXGENE_ARGS": cellxgene_args,
"CELLXGENE_DATA": cellxgene_data,
"PROXY_FIX_FOR": proxy_fix_for,
"PROXY_FIX_PROTO": proxy_fix_proto,
"PROXY_FIX_HOST": proxy_fix_host,