mirror of
https://github.com/Novartis/cellxgene-gateway.git
synced 2026-10-10 06:00:56 +08:00
rebased "Introduction of ItemSource interface" patch
This commit is contained in:
Alok Saldanha
@@ -10,59 +10,68 @@
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-->
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<html>
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<head>
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<title>Cellxgene Gateway - FILE CRAWLER</title>
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<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script>
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<link rel="icon" type="image/png" href="{{ url_for('static', filename='nibr.ico') }}">
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{% for script in extra_scripts %}
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<script src="{{ script }}"></script>
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{% endfor %}
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<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
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{% for script in extra_scripts %}
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<script src="{{ script }}"></script>
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{% endfor %}
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<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css"
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integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
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</head>
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<body>
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<header class="navbar navbar-expand navbar-dark flex-column flex-md-row bd-navbar">
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<h3>Cellxgene Gateway - Cache Status</h3>
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<h3>Cellxgene Gateway - Cache Status</h3>
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</header>
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<br>
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<table class="table">
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<thead>
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<tr>
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<th>PID</th>
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<th>dataset</th>
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<th>annotation_file</th>
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<th>port</th>
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<th>launchtime</th>
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<th>last access</th>
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<th>status</th>
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<th>message</th>
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<th>http_status</th>
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<th>actions</th>
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</tr>
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</thead>
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<tbody>
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{% for entry in entry_list %}
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<tr>
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<td>{{ entry.pid }}</td>
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<td><a href="{{ url_for('do_view', path=entry.key.pathpart) }}">{{ entry.key.dataset }}</a></td>
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<td>{{ entry.key.annotation_file }}</td>
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<td>{{ entry.port }}</td>
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<td class="timestamp">{{ entry.launchtime }}</td>
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<td class="timestamp">{{ entry.timestamp }}</td>
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<td>{{ entry.status.name }}</td>
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<td>{{ entry.message }}</td>
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<td>{{ entry.http_status }}</td>
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<td>
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{% if entry.status.name == 'loaded' %}
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<a href="{{ url_for('do_terminate', path=entry.key.pathpart) }}"> terminate </a>
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{% endif %}
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</td>
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</tr>
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{% endfor %}
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</tbody>
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<tr>
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<th>PID</th>
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<th>dataset</th>
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<th>annotation_file</th>
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<th>source</th>
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<th>port</th>
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<th>launchtime</th>
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<th>last access</th>
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<th>status</th>
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<th>message</th>
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<th>http_status</th>
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<th>actions</th>
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</tr>
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</thead>
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<tbody>
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{% for entry in entry_list %}
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<tr>
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<td>{{ entry.pid }}</td>
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<td><a
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href="{{ url_for('do_view', path=entry.key.descriptor, source_name=entry.key.source_name) }}">{{ entry.key.h5ad_item.descriptor }}</a>
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</td>
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<td>{{ entry.key.annotation_descriptor }}</td>
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<td>{{ entry.source_name }}</td>
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<td>{{ entry.port }}</td>
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<td class="timestamp">{{ entry.launchtime }}</td>
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<td class="timestamp">{{ entry.timestamp }}</td>
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<td>{{ entry.status.name }}</td>
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<td>{{ entry.message }}</td>
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<td>{{ entry.http_status }}</td>
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<td>
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{% if entry.status.name == 'loaded' %}
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<a
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href="{{ url_for('do_terminate', path=entry.key.descriptor, source_name=entry.key.source_name) }}">
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terminate </a>
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{% endif %}
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</td>
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</tr>
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{% endfor %}
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</tbody>
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</table>
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<script>
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$(() => {
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$(".timestamp").each(function(){
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$(".timestamp").each(function () {
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const el = $(this);
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const ts = el.text();
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const dt = new Date(parseInt(ts * 1000));
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@@ -71,4 +80,5 @@
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})
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</script>
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</body>
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</html>
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</html>
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@@ -44,47 +44,6 @@
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<u>Cache Status: view status of launched cellxgene servers.</u></a>
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</div>
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{% if enable_upload %}
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<br>
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<h1 style="padding-left:35px">
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How To Upload Data via HTTP:
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</h1>
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<ol style="padding-left:85px;">
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<li>
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Create a folder for your Username:
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</li>
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<br>
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<form action="{{ url_for('make_user') }}" method="post">
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Username <input type="text" name="directory">
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<input type="submit" value="Create">
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</form>
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<li>
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Create a subdirectory under the selected Folder:
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</li>
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<br>
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<form action="{{ url_for('make_subdir') }}" method="post">
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<select name="usernames" id="usernames">
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{% for user in users %}
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<option value="{{ user }}">{{ user }}</option>
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{% endfor %}
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</select>
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<br>
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Subdirectory Name <input type="text" name="directory">
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<input type="submit" value="Create">
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</form>
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<li>Choose a folder to copy your data to, then upload your data file (must be in .h5ad format).</li>
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<br>
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<form action="{{ url_for('upload_file') }}" method="post" enctype="multipart/form-data">
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Type in the name of the directory and subdirectory you wish to upload to, i.e. "USER/cells". <input type="text" name="path">
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<br>
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File: <input type="file" name="file"><br>
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<input style="position:relative; top:10px;" type="submit" value="Upload">
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</form>
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<br>
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<li>Take a look at your data using the file crawler link above</li>
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</ol>
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{% endif %}
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<br>
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<h1 style="padding-left:35px">
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@@ -36,7 +36,7 @@
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<h4>Options</h4>
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Please choose one of the following, or use the back button:
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<ul>
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<li><a href="{{url_for('do_relaunch', path=dataset)}}">
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<li><a href="{relaunch_url}">
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Attempt to relaunch the cellxgene server.
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</a></li>
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<li><a href="{{ url_for('filecrawl') }}">
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