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updated arguments for cellxgene v 0.15. Added option for backed mode.

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Fidel Ramírez
2020-05-04 13:49:09 +02:00
parent 11bbc1aba8
commit 9a130a8eb7
4 changed files with 13 additions and 7 deletions
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Readme.md
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@@ -67,6 +67,8 @@ Optional environment variables:
* `GATEWAY_PORT` - local port that the gateway should bind to, defaults to 5005
* `GATEWAY_EXTRA_SCRIPTS` - JSON array of script paths, will be embedded into each page and forwarded with `--scripts` to cellxgene server
* `GATEWAY_ENABLE_UPLOAD` - Set to `true` or `1` to enable HTTP uploads. This is not recommended for a public server.
* `GATEWAY_ENABLE_ANNOTATIONS` - Set to `true` or to `1` to enable cellxgene annotations.
* `GATEWAY_ENABLE_BACKED_MODE` - Set to `true` or to `1` to load AnnData in file-backed mode. This saves memory and speeds up launch time but may reduce overall performance.
The defaults should be fine if you set up a venv and cellxgene_data folder as above.