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Applied "Formatting and new enumeration for Cellxgene-gateway" patch

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This commit is contained in:
Alok Saldanha
2020-08-30 13:36:39 -04:00
parent df812f3203
commit b689357f29
19 changed files with 358 additions and 193 deletions
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cellxgene_gateway/env.py
+24 -8
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@@ -7,21 +7,32 @@
# OR CONDITIONS OF ANY KIND, either express or implied. See the License for
# the specific language governing permissions and limitations under the License.
import os
import logging
import os
import socket
cellxgene_location = os.environ.get("CELLXGENE_LOCATION")
cellxgene_data = os.environ.get("CELLXGENE_DATA")
gateway_port = int(os.environ.get("GATEWAY_PORT", "5005"))
external_host = os.environ.get("EXTERNAL_HOST", os.environ.get("GATEWAY_HOST", f"localhost:{gateway_port}"))
external_protocol = os.environ.get("EXTERNAL_PROTOCOL", os.environ.get("GATEWAY_PROTOCOL", "http"))
external_host = os.environ.get(
"EXTERNAL_HOST",
os.environ.get("GATEWAY_HOST", f"localhost:{gateway_port}"),
)
external_protocol = os.environ.get(
"EXTERNAL_PROTOCOL", os.environ.get("GATEWAY_PROTOCOL", "http")
)
ip = os.environ.get("GATEWAY_IP")
extra_scripts = os.environ.get("GATEWAY_EXTRA_SCRIPTS")
ttl = os.environ.get("GATEWAY_TTL")
enable_upload = os.environ.get("GATEWAY_ENABLE_UPLOAD", "").lower() in ['true', '1']
enable_annotations = os.environ.get("GATEWAY_ENABLE_ANNOTATIONS", "").lower() in ['true', '1']
enable_backed_mode = os.environ.get("GATEWAY_ENABLE_BACKED_MODE", "").lower() in ['true', '1']
enable_upload = os.environ.get(
"GATEWAY_ENABLE_UPLOAD", ""
).lower() in ["true", "1"]
enable_annotations = os.environ.get(
"GATEWAY_ENABLE_ANNOTATIONS", ""
).lower() in ["true", "1"]
enable_backed_mode = os.environ.get(
"GATEWAY_ENABLE_BACKED_MODE", ""
).lower() in ['true', '1']
env_vars = {
"CELLXGENE_LOCATION": cellxgene_location,
@@ -40,6 +51,7 @@ optional_env_vars = {
"GATEWAY_ENABLE_BACKED_MODE": enable_backed_mode,
}
def validate():
if not all(env_vars.values()):
raise ValueError(
@@ -58,5 +70,9 @@ def validate():
"""
)
else:
logging.getLogger("cellxgene_gateway").info(f"Got required env: {env_vars}", )
logging.getLogger("cellxgene_gateway").info(f"Got optional env: {optional_env_vars}")
logging.getLogger("cellxgene_gateway").info(
f"Got required env: {env_vars}",
)
logging.getLogger("cellxgene_gateway").info(
f"Got optional env: {optional_env_vars}"
)