fork/cellxgene-gateway
1
0
Fork 0
mirror of https://github.com/Novartis/cellxgene-gateway.git synced 2026-10-06 09:48:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

#22 blackened code

Browse Source
This commit is contained in:
Alok Saldanha
2020-08-10 17:56:32 -04:00
parent 63cdfe1953
commit bfa80f7ef8
15 changed files with 295 additions and 151 deletions
Download Patch File Download Diff File Expand all files Collapse all files
cellxgene_gateway/subprocess_backend.py
+11 -3
View File
@@ -21,10 +21,14 @@ class SubprocessBackend:
def __init__(self):
pass
def create_cmd(self, cellxgene_loc, file_path, port, scripts, annotation_file_path):
def create_cmd(
self, cellxgene_loc, file_path, port, scripts, annotation_file_path
):
if enable_annotations and not annotation_file_path is None:
if annotation_file_path == "":
extra_args = f" --annotations-dir {make_annotations(file_path)}"
extra_args = (
f" --annotations-dir {make_annotations(file_path)}"
)
else:
extra_args = f" --annotations-file {annotation_file_path}"
else:
@@ -47,7 +51,11 @@ class SubprocessBackend:
def launch(self, cellxgene_loc, scripts, cache_entry):
cmd = self.create_cmd(
cellxgene_loc, get_file_path(cache_entry.key), cache_entry.port, scripts, get_annotation_file_path(cache_entry.key)
cellxgene_loc,
get_file_path(cache_entry.key),
cache_entry.port,
scripts,
get_annotation_file_path(cache_entry.key),
)
logging.getLogger("cellxgene_gateway").info(f"launching {cmd}")
process = subprocess.Popen(