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updated tests, formatting

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This commit is contained in:
Alok Saldanha
2021-04-02 11:52:49 -04:00
parent 5c488d8d5e
commit d2d22cecaa
4 changed files with 29 additions and 6 deletions
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cellxgene_gateway/items/s3/s3item_source.py
+5 -3
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@@ -29,8 +29,10 @@ class S3ItemSource(ItemSource):
):
self._name = name
self.s3 = s3fs.S3FileSystem()
if bucket.startswith('s3://'):
raise Exception(f"Bucket name should not include s3:// prefix, got {bucket}")
if bucket.startswith("s3://"):
raise Exception(
f"Bucket name should not include s3:// prefix, got {bucket}"
)
self.bucket = bucket
self.h5ad_suffix = h5ad_suffix
self.annotation_dir_suffix = annotation_dir_suffix
@@ -69,7 +71,7 @@ class S3ItemSource(ItemSource):
raise Exception(f"S3 url '{url}' does not exist.")
s3key_map = dict(
(filepath[len(self.bucket) :].lstrip('/'), "s3://" + filepath)
(filepath[len(self.bucket) :].lstrip("/"), "s3://" + filepath)
for filepath in sorted(self.s3.ls(url))
)