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fix numbering

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This commit is contained in:
Eric Ma
2019-09-06 13:58:39 -04:00
parent 985634a974
commit e43b396877
1 changed files with 5 additions and 6 deletions
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Readme.md
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@@ -19,13 +19,13 @@ python -m venv .cellxgene-gateway
source .cellxgene-gateway/bin/activate source .cellxgene-gateway/bin/activate
``` ```
1. Install requirements with 2. Install requirements with
```bash ```bash
pip install -r requirements.txt pip install -r requirements.txt
``` ```
1. Install the gateway: 3. Install the gateway:
_To install in development mode:_ _To install in development mode:_
@@ -45,14 +45,14 @@ _To install from PyPI:_
# NOT YET DONE, COMING! STAY TUNED # NOT YET DONE, COMING! STAY TUNED
``` ```
1. Prepare a folder with .h5ad files, for example 4. Prepare a folder with .h5ad files, for example
```bash ```bash
mkdir ../cellxgene_data mkdir ../cellxgene_data
wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad
``` ```
1. Set your environment variables correctly: 5. Set your environment variables correctly:
```bash ```bash
export CELLXGENE_LOCATION=`which cellxgene` export CELLXGENE_LOCATION=`which cellxgene`
@@ -62,7 +62,7 @@ export GATEWAY_PROTOCOL=http
export GATEWAY_IP=127.0.0.1 export GATEWAY_IP=127.0.0.1
``` ```
1. Now, execute the cellxgene gateway: 6. Now, execute the cellxgene gateway:
```bash ```bash
cellxgene-gateway cellxgene-gateway
@@ -79,7 +79,6 @@ Here's what the environment variables mean:
The defaults should be fine if you set up a venv and cellxgene_data folder as above. The defaults should be fine if you set up a venv and cellxgene_data folder as above.
# Customization # Customization
The current paradigm for customization is to modify files during a build or deployment phase: The current paradigm for customization is to modify files during a build or deployment phase: