From f296efcc5592b203f1ae085d813cd71daba175c9 Mon Sep 17 00:00:00 2001 From: Alok Saldanha Date: Wed, 21 Dec 2022 16:02:50 -0500 Subject: [PATCH] #79 added cellxgene-data directory so it actually works --- examples/customized_docker_image/Dockerfile | 2 ++ examples/customized_docker_image/README.md | 3 ++- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/examples/customized_docker_image/Dockerfile b/examples/customized_docker_image/Dockerfile index ec825e8..1f71b88 100644 --- a/examples/customized_docker_image/Dockerfile +++ b/examples/customized_docker_image/Dockerfile @@ -9,4 +9,6 @@ ENV CELLXGENE_DATA=/cellxgene-data ENV CELLXGENE_LOCATION=/usr/local/bin/cellxgene EXPOSE 5005 +RUN mkdir /cellxgene-data + CMD ["cellxgene-gateway"] diff --git a/examples/customized_docker_image/README.md b/examples/customized_docker_image/README.md index 800862b..b88dcae 100644 --- a/examples/customized_docker_image/README.md +++ b/examples/customized_docker_image/README.md @@ -6,7 +6,8 @@ This is a simple example of how to make a small script to customize the UI of ce ``` docker build -t cellxgene_custom . -docker run -p 5005:5005 cellxgene_custom +CELLXGENE_DATA=`pwd`/../../../cellxgene_data +docker run -p 5005:5005 --mount src=$CELLXGENE_DATA,target=/cellxgene-data,type=bind cellxgene_custom ``` If you now open http://localhost:5005 you should see a green cellxgene gateway header.