diff --git a/cellxgene_gateway/dir_util.py b/cellxgene_gateway/dir_util.py index 542de40..05db382 100644 --- a/cellxgene_gateway/dir_util.py +++ b/cellxgene_gateway/dir_util.py @@ -68,7 +68,7 @@ def recurse_dir(path): } elif os.path.isdir(full_path): return { - "path": full_path, + "path": full_path.replace(env.cellxgene_data, ""), "name": el, "type": "directory", "children": recurse_dir(full_path), @@ -88,7 +88,8 @@ def render_entries(entries): def render_entry(entry): if entry["type"] == "file": - url = 'view' + '/' + entry['path'].lstrip("/") + url = f"/view/{entry['path'].lstrip('/')}" return f"
  • {entry['name']}
    • " elif entry["type"] == "directory": - return f"
  • {entry['name']}{render_entries(entry['children'])}
    • " + url = f"/filecrawl/{entry['path'].lstrip('/')}" + return f"
  • {entry['name']}{render_entries(entry['children'])}
    • " diff --git a/cellxgene_gateway/gateway.py b/cellxgene_gateway/gateway.py index 47dafa3..28187e2 100644 --- a/cellxgene_gateway/gateway.py +++ b/cellxgene_gateway/gateway.py @@ -168,6 +168,22 @@ def filecrawl(): rendered_html=rendered_html, ) +@app.route("/filecrawl/") +def do_filecrawl(path): + filecrawl_path = os.path.join(env.cellxgene_data, path) + if not os.path.isdir(filecrawl_path): + raise CellxgeneException( + "Path is not directory: " + filecrawl_path, status.HTTP_400_BAD_REQUEST + ) + entries = recurse_dir(filecrawl_path) + rendered_html = render_entries(entries) + return render_template( + "filecrawl.html", + extra_scripts=get_extra_scripts(), + rendered_html=rendered_html, + path=path, + ) + entry_lock = Lock() @app.route("/view/", methods=["GET", "PUT", "POST"]) def do_view(path): diff --git a/cellxgene_gateway/templates/filecrawl.html b/cellxgene_gateway/templates/filecrawl.html index a52ef25..d752163 100644 --- a/cellxgene_gateway/templates/filecrawl.html +++ b/cellxgene_gateway/templates/filecrawl.html @@ -21,7 +21,11 @@
    -

    Cellxgene Gateway - FILE CRAWLER

    + {% if path %} +

    Cellxgene Gateway - {{ path }}

    + {% else %} +

    Cellxgene Gateway - FILE CRAWLER

    + {% endif %}

    @@ -29,6 +33,15 @@
    {{ rendered_html|safe }} - +

    + Navigation: +

    +