5 Commits

Author	SHA1	Message	Date
Alok Saldanha	64d636a1c5	#81 added unit test for gene sets	2023-07-09 07:46:01 -04:00
george-hall-ucl	81c8ce4219	#81 Add support for gene sets ... This adds the flag `GATEWAY_ENABLE_GENE_SETS` to enable support for gene sets. To simplify implementation, activating this flag also activates `GATEWAY_ENABLE_ANNOTATIONS`. The gene sets are saved in a file that has the same name as the annotations `csv` but with `_gene_sets` appended to the file name (before the extension). This file is hidden in filecrawler, and the gene sets are loaded when the associated annotations file is loaded. If the annotations file is missing, then an Exception is raised. I have updated one unit test to make it expect `--disable-gene-sets-save` in the default case (i.e. if `GATEWAY_ENABLE_ANNOTATIONS = 0`). All units tests pass. I have updated the README to document `GATEWAY_ENABLE_GENE_SETS`.	2023-07-06 07:59:12 -06:00
Alok Saldanha	87a8dbfa78	#57 Reverted incorrect change to unit test	2021-12-21 13:59:30 -05:00
Alok Saldanha	9dc4409f1a	#57 added failing unit test	2021-12-21 12:03:39 -05:00
Alok Saldanha	f16bd5e2b9	added test for SubprocessBackend.launch	2021-04-04 19:48:13 -04:00