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100 Commits 17 Branches 22 Tags
patch-itemsource
Commit Graph
59 Commits
Author SHA1 Message Date
Alok Saldanha a6c13a7606 Applied "Introduction of ItemSource interface" patch 2020-10-08 08:37:31 -04:00
Alok Saldanha d5246d4b4b prepared for 0.2.2 release 2020-09-08 21:11:59 -04:00
Alok Saldanha 465373ca7e #30 black formatting 2020-09-08 21:11:59 -04:00
Alok Saldanha ce3eb0eedf Merge branch 'gmerge' into gmaster 
# Conflicts:
#	cellxgene_gateway/backend_cache.py
#	cellxgene_gateway/cache_entry.py
#	cellxgene_gateway/env.py
#	cellxgene_gateway/gateway.py
#	cellxgene_gateway/subprocess_backend.py
#	tests/test_cache_entry.py
#	tests/test_dir_util.py
 2020-08-30 13:47:22 -04:00
Alok Saldanha 9219336356 blackened code 2020-08-30 13:38:35 -04:00
Alok Saldanha b689357f29 Applied "Formatting and new enumeration for Cellxgene-gateway" patch 2020-08-30 13:36:39 -04:00
Alok Saldanha 5349df36e8 prepared for 0.2.1 release 
updated docs
made GATEWAY_IP optional
 2020-08-18 20:02:24 -04:00
Alokito 13802b72b9 Merge pull request #26 from Novartis/feature/25 
#25 added CELLXGENE_ARGS environment variable
 2020-08-18 19:45:31 -04:00
Alok Saldanha 0f8092e07a #25 added CELLXGENE_ARGS environment variable 2020-08-16 17:08:06 -04:00
Alok Saldanha 61c7c43da7 blackened code 2020-08-16 17:07:23 -04:00
Alok Saldanha 8cdd23a57b #24 switched to absolute paths 
relative paths won't necessarily work in css files
 2020-08-16 16:17:28 -04:00
Alok Saldanha 486206bd32 #24 make static paths relative 2020-08-16 16:06:34 -04:00
Alok Saldanha bfa80f7ef8 #22 blackened code 2020-08-10 17:56:32 -04:00
Alok Saldanha 578845b133 #22 Added /metadata/ip_address endpoint 2020-08-10 17:49:03 -04:00
Alok Saldanha 804ea29f36 move version string into module 2020-06-11 13:43:06 -04:00
Alok Saldanha bf221309d8 Merge branch for 0.1.0 release into master 2020-06-11 10:47:43 -04:00
Alok Saldanha 3ea5c29265 Added missing license notifications 2020-06-11 09:58:16 -04:00
Alokito 7c7fa5f12a Use all_entries in cellxgene_gateway/filecrawl.py 2020-05-17 14:57:20 -04:00
Gervaise H. Henry eb4693f1fa Sort os.listdir in filecrawler.py 2020-05-17 14:57:20 -04:00
Fidel Ramírez 9a130a8eb7 updated arguments for cellxgene v 0.15. Added option for backed mode. 2020-05-04 13:49:09 +02:00
Alok Saldanha 186ccde277 misnamed key in process_exception.py 2020-03-30 18:37:29 -04:00
Alok Saldanha 2b65c095a6 updated import to reflect change in werkzeug api 2020-03-23 03:49:20 -04:00
Alok Saldanha cc09ac3b95 #14 fixed links in folder listings 2020-01-18 08:06:38 -05:00
Alok Saldanha 96ac41d860 #14 remove random characters from suffix 2020-01-18 08:00:19 -05:00
Alok Saldanha 525a9691c3 #14 fix bug in pruning code 2020-01-18 07:57:52 -05:00
Alok Saldanha 9f1d217e50 #14 properly use the external protocol in 302 redirects 2020-01-08 03:32:06 -05:00
Alok Saldanha 6c611f55dd #14 redirect prior to returning loading screen 2020-01-07 10:07:46 -05:00
Alok Saldanha 11efd3a954 #14 update links for opening and terminating datasets 2020-01-05 20:13:47 -05:00
Alok Saldanha 201f876341 #14 added custom method to create data dirs 2020-01-01 01:24:18 -05:00
Alok Saldanha 736541c4ec #14 Added support for listing files with _ or - as separator 2019-12-28 22:18:54 -05:00
Alok Saldanha c03098af17 #14 enabled new annotations 
Due to issue with opening annotation files with "-" in the name, this doesn't quite work.
 2019-12-28 21:55:43 -05:00
Alok Saldanha f41db75a24 #15 added intermediate index pages 2019-12-21 11:57:35 -05:00
Alok Saldanha 876263c046 #13 refresh page if more than five dots 2019-11-28 15:54:42 -05:00
Alok Saldanha 9532375eb0 #12 introduce GATEWAY_PORT, rename GATEWAY_HOST and GATEWAY_PROTOCOL to EXTERNAL_HOST and EXTERNAL_PROTOCOL 
Keep GATEWAY_HOST and GATEWAY_PROTOCOL for backwards compatibility (for now)
 2019-11-17 19:03:47 -05:00
Alok Saldanha 91c9607808 #9 fix race condition by grabbing lock before adding cache entry 2019-10-29 21:19:50 -04:00
Alok Saldanha 66f7a6b5a7 #9 properly terminate all child processes 2019-10-29 21:19:18 -04:00
Alok Saldanha 455e0cd087 #9 skip ports that are in use 2019-10-29 21:18:42 -04:00
Alok Saldanha c937f90779 #8 added endpoint to return status json 2019-10-20 21:08:23 -04:00
Alok Saldanha 464ee87305 #7 added link to terminate loaded dataset 2019-10-20 20:53:38 -04:00
Alok Saldanha 2f2541d2b1 #6 added info output of env 
improved logging config
 2019-09-23 15:15:44 -04:00
Alok Saldanha d3a290a3ab #6 add GATEWAY_ENABLE_UPLOAD environment variable 
routes that modify disk are not added unless the env variable is set.
 2019-09-23 14:48:58 -04:00
Alok Saldanha 876538cd52 #5 fixed missing slash in path joining 2019-09-19 13:09:38 -04:00
Alok Saldanha 6cf953aaab #5 added os.path.join to flask routes 
Also added a subdir check for security.
 2019-09-19 12:54:26 -04:00
Alok Saldanha b5158dee47 GH-4 properly reference cache.prune 
also added logging
 2019-09-19 12:04:43 -04:00
Alok Saldanha f6d10946c6 #4 added failing test for cache pruning 2019-09-19 12:02:24 -04:00
Alok Saldanha 0b267725ba #2 replace print() with logging 2019-09-17 13:08:30 -04:00
Alok Saldanha 5c41dbb18d #2 remove missing property 2019-09-17 11:35:25 -04:00
Alok Saldanha 820314adff #2 blackened 2019-09-17 11:06:50 -04:00
Alok Saldanha f7f49b3568 #2 added link to relaunch server on process error page 2019-09-17 11:05:22 -04:00
Alok Saldanha a6d80c1926 #2 added link to view status of currently loaded datasets 2019-09-17 10:16:52 -04:00