#79 added cellxgene-data directory so it actually works

#79 add simple example to customize cellxgene-gateway ui
2026-09-23 01:28:12 +08:00 · 2022-12-21 16:02:50 -05:00 · 2022-12-21 15:42:13 -05:00
3 changed files with 31 additions and 0 deletions
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 FROM python:3.9
 RUN pip install cellxgene-gateway 'MarkupSafe<2.1'
 COPY customize_ui.sh customize_ui.sh
 RUN CELLXGENE_GATEWAY_DIR=/usr/local/lib/python3.9/site-packages/cellxgene_gateway . ./customize_ui.sh
 ENV CELLXGENE_DATA=/cellxgene-data
 ENV CELLXGENE_LOCATION=/usr/local/bin/cellxgene
 EXPOSE 5005
 RUN mkdir /cellxgene-data
 CMD ["cellxgene-gateway"]
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 # Purpose
 This is a simple example of how to make a small script to customize the UI of cellxgene-gateway. The script that does the customization is `customize_ui.sh`, it simply makes the main header green using CSS but you could do anything you want there (including adding more script tags, etc).
 # Usage
 ```
 docker build -t cellxgene_custom .
 CELLXGENE_DATA=`pwd`/../../../cellxgene_data
 docker run -p 5005:5005 --mount src=$CELLXGENE_DATA,target=/cellxgene-data,type=bind cellxgene_custom
 ```
 If you now open http://localhost:5005 you should see a green cellxgene gateway header.
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 # make the header bright green
 find "${CELLXGENE_GATEWAY_DIR}/templates" -name index.html -exec sed -i -e 's/<head>/<head>\
 > <style> header h3 {color: #0F0;} <\/style>/g' {} \;
Author	SHA1	Message	Date
Alok Saldanha	f296efcc55	#79 added cellxgene-data directory so it actually works	2022-12-21 16:02:50 -05:00
Alok Saldanha	facfb27d5c	#79 add simple example to customize cellxgene-gateway ui	2022-12-21 15:42:13 -05:00