# Tests that run on every PR

name: Pull Request Checks

on: [push, pull_request]

jobs:
  black:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
        name: Checkout repository

      - uses: actions/setup-python@v2
        name: Setup Python
        with:
          python-version: 3.9

      - name: Install black
        run: |
          python -m pip install --upgrade pip
          pip install black
      - name: Run black
        run: |
          black . --check
  # This job is copied over from `deploy.yaml`
  run-tests:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2

      # See: https://github.com/marketplace/actions/setup-conda
      - uses: s-weigand/setup-conda@v1
        with:
          conda-channels: "conda-forge"

      - name: Build environment
        run: |
          conda env create -f environment.yml
          eval "$(conda shell.bash hook)"
          conda activate cellxgene-gateway
          python setup.py install

      - name: Run tests
        run: |
          eval "$(conda shell.bash hook)"
          conda activate cellxgene-gateway
          coverage run -m unittest discover tests

      - name: Check coverage
        run: |
          eval "$(conda shell.bash hook)"
          conda activate cellxgene-gateway
          coverage report --fail-under 41
          coverage report > coverage.txt
          coverage html -i
          coverage xml -i

      - name: Upload coverage HTML report
        uses: actions/upload-artifact@v4
        with:
          name: coverage-html
          path: htmlcov/
          retention-days: 30

      - name: Upload coverage xml
        uses: actions/upload-artifact@v4
        with:
          name: coverage-xml
          path: coverage.xml
          retention-days: 30

      - name: Upload coverage summary
        uses: actions/upload-artifact@v4
        with:
          name: coverage-summary
          path: coverage.txt
          retention-days: 30
      # - name: "Upload coverage to Codecov"
      #   if: ${{ github.event_name == 'push' || (github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name == github.repository) }}
      #   uses: codecov/codecov-action@v1
      #   with:
      #     token: ${{ secrets.CODECOV_TOKEN }}
      #     files: ./coverage.xml
      #     flags: unittests
      #     env_vars: OS,PYTHON
      #     name: codecov-umbrella
      #     fail_ci_if_error: true
      #     path_to_write_report: ./codecov_report.txt
      #     verbose: true