# Copyright 2019 Novartis Institutes for BioMedical Research Inc. Licensed # under the Apache License, Version 2.0 (the "License"); you may not use # this file except in compliance with the License. You may obtain a copy # of the License at http://www.apache.org/licenses/LICENSE-2.0. Unless # required by applicable law or agreed to in writing, software distributed # under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES # OR CONDITIONS OF ANY KIND, either express or implied. See the License for # the specific language governing permissions and limitations under the License. import os from cellxgene_gateway import env from cellxgene_gateway.cellxgene_exception import CellxgeneException annotations_suffix = "_annotations" h5ad_suffix = ".h5ad" def make_h5ad(el): return el[: -len(annotations_suffix)] + h5ad_suffix def make_annotations(el): return el[:-5] + annotations_suffix def ensure_dir_exists(file_path): if not os.path.exists(file_path): os.makedirs(file_path)