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30 lines
1023 B
Python
30 lines
1023 B
Python
# Copyright 2019 Novartis Institutes for BioMedical Research Inc. Licensed
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# under the Apache License, Version 2.0 (the "License"); you may not use
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# this file except in compliance with the License. You may obtain a copy
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# of the License at http://www.apache.org/licenses/LICENSE-2.0. Unless
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# required by applicable law or agreed to in writing, software distributed
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# under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES
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# OR CONDITIONS OF ANY KIND, either express or implied. See the License for
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# the specific language governing permissions and limitations under the License.
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import os
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from cellxgene_gateway import env
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from cellxgene_gateway.cellxgene_exception import CellxgeneException
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annotations_suffix = "_annotations"
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h5ad_suffix = ".h5ad"
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def make_h5ad(el):
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return el[: -len(annotations_suffix)] + h5ad_suffix
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def make_annotations(el):
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return el[:-5] + annotations_suffix
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def ensure_dir_exists(file_path):
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if not os.path.exists(file_path):
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os.makedirs(file_path)
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