george-hall-ucl 81c8ce4219 #81 Add support for gene sets ...

This adds the flag `GATEWAY_ENABLE_GENE_SETS` to enable support for gene
sets.  To simplify implementation, activating this flag also activates
`GATEWAY_ENABLE_ANNOTATIONS`.  The gene sets are saved in a file that
has the same name as the annotations `csv` but with `_gene_sets`
appended to the file name (before the extension).  This file is hidden
in filecrawler, and the gene sets are loaded when the associated
annotations file is loaded.

If the annotations file is missing, then an Exception is raised.

I have updated one unit test to make it expect
`--disable-gene-sets-save` in the default case (i.e. if
`GATEWAY_ENABLE_ANNOTATIONS = 0`).  All units tests pass.

I have updated the README to document `GATEWAY_ENABLE_GENE_SETS`.

2023-07-06 07:59:12 -06:00

..

items

#66 switched from mocks to test request context

2022-06-07 07:22:30 -04:00

test_backend_cache.py

added test for is_port_in_use

2021-05-11 07:27:30 -04:00

test_cache_entry.py

updated tests, formatting

2021-04-02 11:52:49 -04:00

test_dir_util.py

added unit tests for dir_util

2021-04-23 07:14:09 -04:00

test_extra_scripts.py

improved error message on invalid extra scripts

2021-04-21 06:21:26 -04:00

test_filecrawl.py

#57 added failing unit test

2021-12-21 12:03:39 -05:00

test_prune_process_cache.py

#65 add environment variable to control how long cellxgene processes can remain idle

2022-06-20 21:46:19 -04:00

test_subprocess_backend.py

#81 Add support for gene sets

2023-07-06 07:59:12 -06:00