mirror of
https://github.com/Novartis/cellxgene-gateway.git
synced 2026-09-15 12:47:59 +08:00
68 lines
1.7 KiB
YAML
68 lines
1.7 KiB
YAML
# Tests that run on every PR
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name: Pull Request Checks
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on: [push, pull_request]
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jobs:
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black:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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name: Checkout repository
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- uses: actions/setup-python@v2
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name: Setup Python
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with:
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python-version: 3.9
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- name: Install black
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run: |
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python -m pip install --upgrade pip
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pip install black
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- name: Run black
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run: |
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black . --check
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# This job is copied over from `deploy.yaml`
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run-tests:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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# See: https://github.com/marketplace/actions/setup-conda
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- uses: s-weigand/setup-conda@v1
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with:
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conda-channels: "conda-forge"
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- name: Build environment
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run: |
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conda env create -f environment.yml
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eval "$(conda shell.bash hook)"
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conda activate cellxgene-gateway
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python setup.py install
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- name: Run tests
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run: |
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eval "$(conda shell.bash hook)"
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conda activate cellxgene-gateway
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coverage run -m unittest discover tests
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- name: Check coverage
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run: |
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eval "$(conda shell.bash hook)"
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conda activate cellxgene-gateway
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coverage report --fail-under 41
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coverage xml -i
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- name: "Upload coverage to Codecov"
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uses: codecov/codecov-action@v1
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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files: ./coverage.xml
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flags: unittests
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env_vars: OS,PYTHON
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name: codecov-umbrella
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fail_ci_if_error: true
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path_to_write_report: ./codecov_report.txt
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verbose: true
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