fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-10-06 20:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

Docs: add parameters to /config (#357)

Browse Source 
* add parameters to /config

* add real parameters
This commit is contained in:
Bruce Martin
2018-10-30 11:04:30 -07:00
committed by GitHub
parent bc15e9229f
commit 01369801fc
1 changed files with 25 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files
docs/REST_API.md
+25 -4
View File
@@ -201,13 +201,16 @@ Information will include:
- Diff Exp: integer number of obs/vars at which the differential expression compute is non-interactive. Omitted if POST /diffexp not supported - Diff Exp: integer number of obs/vars at which the differential expression compute is non-interactive. Omitted if POST /diffexp not supported
- Human readable information: - Human readable information:
- Data set name / title - for display purposes. - Data set name / title - for display purposes.
- Engine name and version - for display purposes - Engine name and version - for display purposes.
- System-wide configuration parameters, eg, configuration the end user has specified via a CLI or server configuration system.
**Response body:** **Response body:**
- Features - encoded as array of features. All optional features must be included. Each feature will be identified by an HTTP method and path **prefix**, and will have availability status. If not specified as unavailable, the feature must be implemented. - `features` - encoded as array of features. All optional features must be included. Each feature will be identified by an HTTP method and path **prefix**, and will have availability status. If not specified as unavailable, the feature must be implemented.
- Limitations are optional, and specified as an additional parameter on a feature, encoded as a number value with key `interactiveLimit`. By convention, this is the maximum number of inputs at which point the request is likely to return an error indicating non-interactive compute request. For example, this might be the maximum number of observations specified in the request to `PUT /layout/obs`. - Limitations are optional, and specified as an additional parameter on a feature, encoded as a number value with key `interactiveLimit`. By convention, this is the maximum number of inputs at which point the request is likely to return an error indicating non-interactive compute request. For example, this might be the maximum number of observations specified in the request to `PUT /layout/obs`.
- Display names will include `engine` and `dataset` display names, as a JSON string. These should be relatively short strings (eg, suitable for window titles or equivalent) - mandatory routes do not need to be specified
- `displayNames` - names will include `engine` and `dataset` display names, as a JSON string. These should be relatively short strings (eg, suitable for window titles or equivalent)
- `parameters` - system configuration parameters, specified as a key/value pair in a simple object. See [Currently Defined Parameters](#currently-defined-parameters) for additional information.
``` ```
GET /config GET /config
@@ -230,6 +233,11 @@ GET /config
"engine": "ScanPy version 1.33", "engine": "ScanPy version 1.33",
"dataset": "/home/joe/mouse/blorth.csv" "dataset": "/home/joe/mouse/blorth.csv"
}, },
"parameters": {
"max-category-items": 1000,
"verbose": false
// name: value
}
} }
} }
``` ```
@@ -460,6 +468,7 @@ Get the _default_ layout for all observations or (_future_) all variables. Retur
} }
} }
``` ```
**Response code:** **Response code:**
- 200 - success - 200 - success
@@ -698,6 +707,18 @@ Currently unused routes:
- `/layout/var` - `/layout/var`
- `/data/saveSelection` - `/data/saveSelection`
## Currently Defined Parameters
The system currently defines the following parameters:
- `max-category-items` - if any categorical annotation has a unique value count exceeding
this parameter, it will not be displayed to the user. Number.
- `layout` - algorithm to use for graph layout. String.
- `diffexp` - algorithm to used to calculate differential expression. String.
- `title` - data set name. String.
- `debug` - run in debug mode. Boolean.
- `verbose` - more verbose logging. Boolean.
<!-- Endnotes themselves at the bottom. --> <!-- Endnotes themselves at the bottom. -->
## Notes ## Notes