diff --git a/client/__tests__/e2e/__snapshots__/e2eAnnotations.test.js.snap b/client/__tests__/e2e/__snapshots__/e2eAnnotations.test.js.snap index 3ad14bca..f74f258b 100644 --- a/client/__tests__/e2e/__snapshots__/e2eAnnotations.test.js.snap +++ b/client/__tests__/e2e/__snapshots__/e2eAnnotations.test.js.snap @@ -3,7 +3,7 @@ exports[`annotations stacked bar graph renders 1`] = ` Array [ "
TEST-LABELLABEL
0
", - "
unassignedigned
2132
", + "
unassignedigned
2133
", ] `; diff --git a/client/__tests__/e2e/data.js b/client/__tests__/e2e/data.js index b7f8db77..9796b96b 100644 --- a/client/__tests__/e2e/data.js +++ b/client/__tests__/e2e/data.js @@ -27,7 +27,7 @@ export const datasets = { lasso: [ { "coordinates-as-percent": { x1: 0.1, y1: 0.25, x2: 0.7, y2: 0.75 }, - count: "1173", + count: "1131", }, ], categorical: [ @@ -121,8 +121,8 @@ export const datasets = { }, newCount: { bySubsetConfig: { - false: "599", - true: "594", + false: "668", + true: "659", }, }, }, diff --git a/client/src/components/app.js b/client/src/components/app.js index fe1de5e7..4de58f1c 100644 --- a/client/src/components/app.js +++ b/client/src/components/app.js @@ -11,6 +11,7 @@ import Legend from "./continuousLegend"; import Graph from "./graph/graph"; import MenuBar from "./menubar"; import Autosave from "./autosave"; +import Embedding from "./embedding"; import TermsOfServicePrompt from "./termsPrompt"; import actions from "../actions"; @@ -73,6 +74,7 @@ class App extends React.Component { {(viewportRef) => ( <> + diff --git a/client/src/components/embedding/index.js b/client/src/components/embedding/index.js new file mode 100644 index 00000000..868b6ae1 --- /dev/null +++ b/client/src/components/embedding/index.js @@ -0,0 +1,105 @@ +import React from "react"; +import { connect } from "react-redux"; +import { + ButtonGroup, + Popover, + Button, + Radio, + RadioGroup, + Tooltip, + Position, +} from "@blueprintjs/core"; +import * as globals from "../../globals"; +import actions from "../../actions"; + +@connect((state) => { + return { + layoutChoice: state.layoutChoice, + schema: state.annoMatrix?.schema, + crossfilter: state.obsCrossfilter, + }; +}) +class Embedding extends React.PureComponent { + constructor(props) { + super(props); + this.state = {}; + } + + handleLayoutChoiceChange = (e) => { + const { dispatch } = this.props; + dispatch(actions.layoutChoiceAction(e.currentTarget.value)); + }; + + render() { + const { layoutChoice, schema, crossfilter } = this.props; + return ( + + + + + } + // minimal /* removes arrow */ + position={Position.TOP_LEFT} + content={ +
+

Embedding Choice

+

+ There are {schema?.dataframe?.nObs} cells in the entire dataset. +

+ + {layoutChoice.available.map((name) => ( + + ))} + +
+ } + /> + + ); + } +} + +export default Embedding; diff --git a/client/src/components/graph/graph.js b/client/src/components/graph/graph.js index c91f6e0a..7ec11976 100644 --- a/client/src/components/graph/graph.js +++ b/client/src/components/graph/graph.js @@ -34,8 +34,10 @@ function createProjectionTF(viewportWidth, viewportHeight) { the projection transform accounts for the screen size & other layout */ const fractionToUse = 0.95; // fraction of min dimension to use - const topGutterSizePx = 32; // toolbar box height - const heightMinusGutter = viewportHeight - topGutterSizePx; + const topGutterSizePx = 32; // top gutter for tools + const bottomGutterSizePx = 32; // bottom gutter for tools + const heightMinusGutter = + viewportHeight - topGutterSizePx - bottomGutterSizePx; const minDim = Math.min(viewportWidth, heightMinusGutter); const aspectScale = [ (fractionToUse * minDim) / viewportWidth, @@ -44,7 +46,7 @@ function createProjectionTF(viewportWidth, viewportHeight) { const m = mat3.create(); mat3.fromTranslation(m, [ 0, - -topGutterSizePx / viewportHeight / aspectScale[1], + (bottomGutterSizePx - topGutterSizePx) / viewportHeight / aspectScale[1], ]); mat3.scale(m, m, aspectScale); return m; diff --git a/client/src/components/menubar/embedding.js b/client/src/components/menubar/embedding.js deleted file mode 100644 index d0bfc260..00000000 --- a/client/src/components/menubar/embedding.js +++ /dev/null @@ -1,118 +0,0 @@ -import React from "react"; -import { - ButtonGroup, - Popover, - Button, - Radio, - RadioGroup, - Tooltip, - Position, -} from "@blueprintjs/core"; -import { connect } from "react-redux"; -import * as globals from "../../globals"; -import styles from "./menubar.css"; -import actions from "../../actions"; - -@connect((state) => ({ - layoutChoice: state.layoutChoice, - // disabled temporarily. TODO - issue #1606 - // reembedController: state.reembedController, - // enableReembedding: state.config?.parameters?.["enable-reembedding"] ?? false, - enableReembedding: false, -})) -class Embedding extends React.PureComponent { - handleLayoutChoiceChange = (e) => { - const { dispatch } = this.props; - dispatch(actions.layoutChoiceAction(e.currentTarget.value)); - }; - - // eslint-disable-next-line class-methods-use-this -- temporary disable - renderReembedding() { - return null; - /* disabled pending rewrite. TODO - issue #1606 - const { - enableReembedding, - world, - universe, - dispatch, - reembedController, - } = this.props; - - if (!enableReembedding) return null; - - const loading = !!reembedController?.pendingFetch; - const disabled = World.worldEqUniverse(world, universe); - const tipContent = disabled - ? "Subset cells first, then click to recompute UMAP embedding." - : "Click to recompute UMAP embedding on the current cell subset."; - - return ( - - dispatch(actions.requestReembed())} - loading={loading} - /> - - ); -*/ - } - - render() { - const { layoutChoice } = this.props; - - return ( - - -