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Undo selection appends genes from differential expression to user gene list (#1183)
* Undo selection appends diffExp genes to user gene list Fixes https://github.com/chanzuckerberg/cellxgene/issues/1171 Need: When a user performs a differential expression from within a sub-selection (world) of the data and then resets the selection to all cells (universe), the differential expression results are no longer valid. Approach: * When the selection is reset, move the top (maxUserDefinedGenes - len(userDefinedGenes) from the differential expression results to the list of user defined genes * Raise maxUserDefinedGenes to 25 to give users more room and accommodate the extra genes transferred in from differential expression Other commits: * Choose different button icons * Add diff exp genes to user defined genes on subset too * Respond to feedback from @liaprins-czi and @bkmartinjr
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@@ -149,7 +149,7 @@ const doInitialDataLoad = () =>
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Set the view (world) to current selection. Placeholder for an async action
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which also does re-layout.
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*/
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const regraph = () => (dispatch, getState) => {
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const setWorldToSelection = () => (dispatch, getState) => {
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const { universe, world, crossfilter } = getState();
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dispatch({
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type: "set World to current selection",
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@@ -167,7 +167,7 @@ const dispatchExpressionErrors = (dispatch, res) => {
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};
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/*
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Fetch expression vectors for each gene in genes. This is NOT an action
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Fetch expression vectors for each gene in genes. This is NOT an action
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function, but rather a helper to be called from an action helper that
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needs expression data.
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@@ -385,37 +385,12 @@ const requestDifferentialExpression = (set1, set2, num_genes = 10) => async (
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}
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};
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const resetInterface = () => (dispatch, getState) => {
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const resetWorldToUniverse = () => (dispatch, getState) => {
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const { universe } = getState();
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dispatch({
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type: "user reset start"
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});
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dispatch({
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type: "clear all user defined genes"
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});
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dispatch({
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type: "clear differential expression"
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});
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dispatch({
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type: "reset colorscale"
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});
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dispatch({
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type: "reset centroid labels"
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});
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dispatch({
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type: "clear scatterplot"
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});
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dispatch({
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type: "reset World to eq Universe",
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universe
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});
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dispatch({
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type: "increment graph render counter"
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});
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dispatch({
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type: "user reset end"
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});
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};
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const saveObsAnnotations = () => async (dispatch, getState) => {
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@@ -472,11 +447,11 @@ const saveObsAnnotations = () => async (dispatch, getState) => {
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};
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export default {
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regraph,
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resetInterface,
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requestSingleGeneExpressionCountsForColoringPOST,
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requestDifferentialExpression,
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requestUserDefinedGene,
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doInitialDataLoad,
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saveObsAnnotations
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requestDifferentialExpression,
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requestSingleGeneExpressionCountsForColoringPOST,
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requestUserDefinedGene,
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resetWorldToUniverse,
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saveObsAnnotations,
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setWorldToSelection,
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};
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