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remove experimental reembedding support (#2301)

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* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
This commit is contained in:
Bruce Martin
2021-07-15 13:55:26 -07:00
committed by GitHub
parent e334fbe96e
commit 0667ad0274
46 changed files with 12 additions and 661 deletions
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backend/czi_hosted/data_cxg/cxg_adaptor.py
-3
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@@ -199,9 +199,6 @@ class CxgAdaptor(DataAdaptor):
array = self.open_array(f"emb/{ename}")
return array[:, 0:dims]
def compute_embedding(self, method, filter):
raise NotImplementedError("CXG does not yet support re-embedding")
def compute_diffexp_ttest(self, maskA, maskB, top_n=None, lfc_cutoff=None):
if top_n is None:
top_n = self.dataset_config.diffexp__top_n