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remove experimental reembedding support (#2301)

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* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
This commit is contained in:
Bruce Martin
2021-07-15 13:55:26 -07:00
committed by GitHub
parent e334fbe96e
commit 0667ad0274
46 changed files with 12 additions and 661 deletions
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backend/czi_hosted/requirements.txt
-2
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@@ -21,6 +21,4 @@ scipy>=1.0
requests>=2.22.0
tiledb>=0.5.9,>=0.6.2,!=0.7.2, !=0.8.6
s3fs==0.4.2
scanpy==1.4.6 # Until we move to anndata 0.7.4 scanpy needs to be pinned here
sqlalchemy>=1.3.18
umap-learn<0.5.0 # The pinned version scanpy is not compatible with latest umap-learn