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https://github.com/chanzuckerberg/cellxgene.git
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remove experimental reembedding support (#2301)
* remove experimental reembedding support * lint * lint * add prepare requirements to requirements-dev * oops, revert accidental deletion of import * more test modifications * remove obsolete unit tests
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@@ -107,14 +107,6 @@ def config_args(func):
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metavar="<text>",
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help="Embedding name, eg, 'umap'. Repeat option for multiple embeddings. Defaults to all.",
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)
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@click.option(
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"--experimental-enable-reembedding",
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is_flag=True,
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default=DEFAULT_CONFIG.dataset_config.embeddings__enable_reembedding,
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show_default=False,
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hidden=True,
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help="Enable experimental on-demand re-embedding using UMAP. WARNING: may be very slow.",
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)
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@functools.wraps(func)
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def wrapper(*args, **kwargs):
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return func(*args, **kwargs)
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@@ -324,7 +316,6 @@ def launch(
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disable_gene_sets_save,
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backed,
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disable_diffexp,
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experimental_enable_reembedding,
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config_file,
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dump_default_config,
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):
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@@ -383,7 +374,6 @@ def launch(
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presentation__max_categories=max_category_items,
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presentation__custom_colors=not disable_custom_colors,
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embeddings__names=embedding,
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embeddings__enable_reembedding=experimental_enable_reembedding,
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diffexp__enable=not disable_diffexp,
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diffexp__lfc_cutoff=diffexp_lfc_cutoff,
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)
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