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Code Issues Packages Projects Releases Wiki Activity

remove experimental reembedding support (#2301)

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* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
This commit is contained in:
Bruce Martin
2021-07-15 13:55:26 -07:00
committed by GitHub
parent e334fbe96e
commit 0667ad0274
46 changed files with 12 additions and 661 deletions
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backend/server/common/rest.py
-19
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@@ -311,25 +311,6 @@ def layout_obs_get(request, data_adaptor):
)
def layout_obs_put(request, data_adaptor):
if not data_adaptor.dataset_config.embeddings__enable_reembedding:
return abort(HTTPStatus.NOT_IMPLEMENTED)
args = request.get_json()
filter = args["filter"] if args else None
if not filter:
return abort_and_log(HTTPStatus.BAD_REQUEST, "obs filter is required")
method = args["method"] if args else "umap"
try:
schema = data_adaptor.compute_embedding(method, filter)
return make_response(jsonify(schema), HTTPStatus.OK, {"Content-Type": "application/json"})
except NotImplementedError as e:
return abort_and_log(HTTPStatus.NOT_IMPLEMENTED, str(e))
except (ValueError, DisabledFeatureError, FilterError) as e:
return abort_and_log(HTTPStatus.BAD_REQUEST, str(e), include_exc_info=True)
def genesets_get(request, data_adaptor):
preferred_mimetype = request.accept_mimetypes.best_match(["application/json", "text/csv"])
if preferred_mimetype not in ("application/json", "text/csv"):