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Code Issues Packages Projects Releases Wiki Activity

remove experimental reembedding support (#2301)

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* remove experimental reembedding support

* lint

* lint

* add prepare requirements to requirements-dev

* oops, revert accidental deletion of import

* more test modifications

* remove obsolete unit tests
This commit is contained in:
Bruce Martin
2021-07-15 13:55:26 -07:00
committed by GitHub
parent e334fbe96e
commit 0667ad0274
46 changed files with 12 additions and 661 deletions
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backend/server/data_common/data_adaptor.py
-5
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@@ -66,11 +66,6 @@ class DataAdaptor(metaclass=ABCMeta):
"""return an numpy array for the given pre-computed embedding name."""
pass
@abstractmethod
def compute_embedding(self, method, filter):
"""compute a new embedding on the specified obs subset, and return the embedding schema."""
pass
@abstractmethod
def get_X_array(self, obs_mask=None, var_mask=None):
"""return the X array, possibly filtered by obs_mask or var_mask.