subset embedding UI improvement (#1667)

* add user flag feature to annomatrix

* add implicit subsetting for partial embeddings

* lint

* add embedding cell counts to embedding choice menu

* layout

client/src/annoMatrix/annoMatrix.js

@@ -70,6 +70,8 @@ export default class AnnoMatrix {
         The row index labels are as defined by the base dataset from the server.
       * isView - true if this is a view, false if not.
       * viewOf - pointer to parent annomatrix if a view, undefined/null if not a view.
+      * userFlags - container for any additional state a user of this API wants to hang
+        off of an annoMatrix, and have propagated by the (shallow) cloning protocol.
     */
     this.schema = indexEntireSchema(schema);
     this.nObs = nObs;
@@ -77,6 +79,7 @@ export default class AnnoMatrix {
     this.rowIndex = rowIndex || new IdentityInt32Index(nObs);
     this.isView = false;
     this.viewOf = undefined;
+    this.userFlags = {};
 
     /*
 		Private instance variables.

client/src/annoMatrix/viewCreators.js

@@ -33,6 +33,13 @@ export function subset(annoMatrix, obsLabels) {
   return new AnnoMatrixRowSubsetView(annoMatrix, obsIndex);
 }
 
+export function subsetByIndex(annoMatrix, obsIndex) {
+  /*
+  subset based upon the new obs index.
+  */
+  return new AnnoMatrixRowSubsetView(annoMatrix, obsIndex);
+}
+
 export function clip(annoMatrix, qmin, qmax) {
   /*
 		Create a view that clips all continuous data to the [min, max] range.
@@ -59,5 +66,5 @@ function _maskToList(mask) {
       elems += 1;
     }
   }
-  return new Int32Array(list.buffer, 0, elems);
+  return list.subarray(0, elems);
 }