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rename X_approx_distribution to X_approximate_distribution (#2337)

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This commit is contained in:
Bruce Martin
2021-07-27 13:43:04 -07:00
committed by GitHub
parent 1998c0ad63
commit 0b1ab02a60
20 changed files with 79 additions and 77 deletions
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backend/czi_hosted/common/config/dataset_config.py
+6 -6
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@@ -44,7 +44,7 @@ class DatasetConfig(BaseConfig):
self.diffexp__lfc_cutoff = default_config["diffexp"]["lfc_cutoff"]
self.diffexp__top_n = default_config["diffexp"]["top_n"]
self.X_approx_distribution = default_config["X_approx_distribution"]
self.X_approximate_distribution = default_config["X_approximate_distribution"]
except KeyError as e:
raise ConfigurationError(f"Unexpected config: {str(e)}")
@@ -60,7 +60,7 @@ class DatasetConfig(BaseConfig):
self.handle_user_annotations(context)
self.handle_embeddings()
self.handle_diffexp(context)
self.handle_X_approx_distribution()
self.handle_X_approximate_distribution()
def handle_app(self):
self.validate_correct_type_of_configuration_attribute("app__scripts", list)
@@ -203,9 +203,9 @@ class DatasetConfig(BaseConfig):
"running differential expression may take longer or fail."
)
def handle_X_approx_distribution(self):
self.validate_correct_type_of_configuration_attribute("X_approx_distribution", str)
if self.X_approx_distribution not in ["normal", "count"]:
def handle_X_approximate_distribution(self):
self.validate_correct_type_of_configuration_attribute("X_approximate_distribution", str)
if self.X_approximate_distribution not in ["normal", "count"]:
raise ConfigurationError(
"X_approx_distribution has unknown value -- must be 'normal' or 'count'."
"X_approximate_distribution has unknown value -- must be 'normal' or 'count'."
)