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rename X_approx_distribution to X_approximate_distribution (#2337)
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@@ -151,8 +151,8 @@ def dataset_args(func):
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help="URL providing more information about the dataset (hint: must be a fully specified absolute URL).",
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)
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@click.option(
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"--X-approx-distribution",
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default=DEFAULT_CONFIG.dataset_config.X_approx_distribution,
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"--X-approximate-distribution",
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default=DEFAULT_CONFIG.dataset_config.X_approximate_distribution,
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show_default=True,
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type=click.Choice(["auto", "normal", "count"], case_sensitive=False),
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help="Specify the approximate distribution of X matrix values. 'auto' will use a heuristic "
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@@ -326,7 +326,7 @@ def launch(
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disable_diffexp,
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config_file,
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dump_default_config,
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x_approx_distribution,
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x_approximate_distribution,
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):
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"""Launch the cellxgene data viewer.
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This web app lets you explore single-cell expression data.
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@@ -385,7 +385,7 @@ def launch(
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embeddings__names=embedding,
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diffexp__enable=not disable_diffexp,
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diffexp__lfc_cutoff=diffexp_lfc_cutoff,
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X_approx_distribution=x_approx_distribution,
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X_approximate_distribution=x_approximate_distribution,
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)
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diff = cli_config.server_config.changes_from_default()
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