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rename X_approx_distribution to X_approximate_distribution (#2337)

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This commit is contained in:
Bruce Martin
2021-07-27 13:43:04 -07:00
committed by GitHub
parent 1998c0ad63
commit 0b1ab02a60
20 changed files with 79 additions and 77 deletions
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backend/test/test_czi_hosted/unit/common/config/__init__.py
+3 -3
View File
@@ -131,7 +131,7 @@ class ConfigTests(BaseTest):
environment=None,
aws_secrets_manager_region=None,
aws_secrets_manager_secrets=[],
X_approx_distribution="normal",
X_approximate_distribution="normal",
config_file_name="app_config.yml",
):
random_num = random.randrange(999999)
@@ -195,7 +195,7 @@ class ConfigTests(BaseTest):
enable_difexp=enable_difexp,
lfc_cutoff=lfc_cutoff,
top_n=top_n,
X_approx_distribution=X_approx_distribution,
X_approximate_distribution=X_approximate_distribution,
config_file_name=f"temp_dataset_config_{random_num}.yml",
)
external_config = self.custom_external_config(
@@ -231,7 +231,7 @@ class ConfigTests(BaseTest):
enable_difexp="true",
lfc_cutoff=0.01,
top_n=10,
X_approx_distribution="normal",
X_approximate_distribution="normal",
config_file_name="dataset_config.yml",
):
configfile = os.path.join(self.tmp_fixtures_directory, config_file_name)
backend/test/test_czi_hosted/unit/compute/test_diffexp_cxg.py
+1 -1
View File
@@ -20,7 +20,7 @@ class DiffExpTest(unittest.TestCase):
adaptor types and different algorithms."""
def load_dataset(self, path, extra_server_config={}, extra_dataset_config={}):
extra_dataset_config["X_approx_distribution"] = "normal" # hardwired for now
extra_dataset_config["X_approximate_distribution"] = "normal" # hardwired for now
config = app_config(path, extra_server_config=extra_server_config, extra_dataset_config=extra_dataset_config)
loader = MatrixDataLoader(path)
adaptor = loader.open(config)