From 0e48b335bee0ae91a5ec2403f77860db9dd94bf7 Mon Sep 17 00:00:00 2001 From: bmccandless Date: Wed, 13 Jan 2021 13:01:46 -0800 Subject: [PATCH] update umap version (#2021) There is an interface change in 0.5.0 which is not compatible with our version of scanpy. --- server/requirements.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/server/requirements.txt b/server/requirements.txt index 1cd9a0e2..1cfdf7d5 100644 --- a/server/requirements.txt +++ b/server/requirements.txt @@ -24,3 +24,4 @@ tiledb>=0.5.9,>=0.6.2,!=0.7.2 s3fs==0.4.2 scanpy==1.4.6 # Until we move to anndata 0.7.4 scanpy needs to be pinned here sqlalchemy>=1.3.18 +umap-learn<0.5.0 # The pinned version scanpy is not compatible with latest umap-learn