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experimental re-embedding (#1186)
* first cut at re-embedding route and back-end support * update and expand config route tests * add scanpy_umap * add reembedding to config route parameters * front-end support for reembedding fetch and UI * remove unused imports * add loading state * save reembedding in reducer state * improve withColsFrom * transmit reembed schema to client; pick unique embedding names * display embeddings * format * lint * spaces, tab size 2 * lint * test hack for smoke-test race * back out hack sleep * add check for backed mode * add unit test for reembedding * lint * hide re-embedding CLI param from help
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@@ -164,6 +164,9 @@ class CxgAdaptor(DataAdaptor):
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array = self.open_array(f"emb/{ename}")
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return array[:, 0:dims]
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def compute_embedding(self, method, filter):
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raise NotImplementedError("CXG does not yet support re-embedding")
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def get_X_array(self, obs_mask=None, var_mask=None):
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obs_items = self._convert_mask(obs_mask)
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var_items = self._convert_mask(var_mask)
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