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Minimum working iterator version

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Checkpointing. This is a minimum working version using the iterator. I basically hacked consuming the iterator since I want to switch directions, but this is a good place to come back to.
This commit is contained in:
Charlotte Weaver
2018-06-22 10:01:52 -07:00
parent fabd3ca2ff
commit 1621d20bc4
6 changed files with 74 additions and 32 deletions
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backend/app/__init__.py
+5 -5
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@@ -16,8 +16,9 @@ CORS(app)
#Config
CONFIG_FILE = os.environ.get("CXG_CONFIG_FILE", default="scanpy-test.cfg")
CXG_DIR = os.environ.get("CXG_DIRECTORY", default="/Users/charlotteweaver/Documents/Git/cxg-v2/")
CXG_DIR = os.environ.get("CXG_DIRECTORY", default="/Users/charlotteweaver/Documents/Git/cxg-v2/data/")
SECRET_KEY = os.environ.get("CXG_SECRET_KEY", default="SparkleAndShine")
ENGINE = os.environ.get("CXG_ENGINE", default="scanpy")
# TODO remove the 2 when this is prod
CXG_API_BASE = os.environ.get("CXG_API_BASE2", default="http://0.0.0.0:5005/api/")
@@ -28,9 +29,8 @@ app.config.from_pyfile(os.path.join(CXG_DIR, "config", CONFIG_FILE), silent=True
app.config.update(
SECRET_KEY=SECRET_KEY,
CXG_API_BASE=CXG_API_BASE,
)
app.config.update(
DATA=os.path.join(CXG_DIR, app.config["DATA_DIR"]),
ENGINE=ENGINE,
DATA=CXG_DIR
)
app.config['PROFILE'] = True
@@ -40,7 +40,7 @@ app.config['PROFILE'] = True
data = None
if app.config["ENGINE"] == "scanpy":
from .scanpy_engine.scanpy_engine import ScanpyEngine
data = ScanpyEngine(app.config["DATA"])
data = ScanpyEngine(app.config["DATA"], schema="data_schema.json")
REACTIVE_LIMIT = 1_000_000