fix for incorrect stats computation in diff exp t-test (#2318)

* 2211 fixes

* lint

* lint

* add missing test and bug found by test

* change terminology for count distribution

* update scanpy requirement

* update scanpy requirement
This commit is contained in:
Bruce Martin
2021-07-23 11:36:26 -07:00
committed by GitHub
parent 1ebde2213d
commit 1ea2b7fe80
28 changed files with 336 additions and 90 deletions
+3 -3
View File
@@ -1,4 +1,4 @@
anndata>=0.7.0
anndata>=0.7.6 # we need to_memory(), added in 0.7.6
boto3>=1.12.18
click>=7.1.2
Flask>=1.0.2,<2.0.0 # Flask 2.0 is not compatible with the latest version of Flask-RESTful (0.3.8)
@@ -11,9 +11,9 @@ flatbuffers>=1.11.0,<2.0.0 # cellxgene is not compatible with 2.0.0. Requires mi
flatten-dict>=0.2.0
fsspec>=0.4.4,<0.8.0
gunicorn>=20.0.4
h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5
h5py>=3.0.0
jinja2>=2.11.3 # Flask sub-dependency. Added due to CVE-2020-28493
numba>=0.51.2,<0.53.0
numba>=0.51.2
numpy>=1.17.5
packaging>=20.0
pandas>=1.0,!=1.1 # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446