From 1ed68261d49de3c842bbde59394357c01c73904a Mon Sep 17 00:00:00 2001 From: Sidney Bell Date: Wed, 27 Nov 2019 08:49:21 -0800 Subject: [PATCH] Add sceasy package to docs --- docs/posts/prepare.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/posts/prepare.md b/docs/posts/prepare.md index 0d397b89..fc9244ee 100644 --- a/docs/posts/prepare.md +++ b/docs/posts/prepare.md @@ -13,7 +13,7 @@ If your data is in `h5ad` file (from the [`anndata`](https://anndata.readthedocs - A unique identifier for every gene is available in an `anndata.var` field (you can specify which field to use with the `--var-names` option) #### What about R objects from seurat / bioconductor!? -We hear you! We'd also love to be able to ingest these files directly. This isn't currently possible, but in the meantime, you can use one of [these handy adapters](https://satijalab.org/seurat/v3.0/conversion_vignette.html) to convert to `h5ad`. +We hear you! We'd also love to be able to ingest these files directly. This isn't currently possible, but in the meantime, you can use [sceasy](https://bioconda.github.io/recipes/r-sceasy/README.html) ([docs](https://cellgeni.readthedocs.io/en/latest/visualisations.html)) to convert to `h5ad`. Seurat also has some [handy conversion tools](https://satijalab.org/seurat/v3.0/conversion_vignette.html) that you can try out. #### Can I use data hosted on the web somewhere? Yes! You can launch from a URL instead of a filepath. The same data format requirements apply. Please see [here](launch) for more details.