mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-10-04 15:18:11 +08:00
updates the roadmap & reorganizes the README (#712)
This commit is contained in:
+54
@@ -0,0 +1,54 @@
|
||||
# cellxgene roadmap
|
||||
|
||||
We are very exited for _cellxgene_ to become a valuable tool in collaborations
|
||||
between computational biologists and experimental biologists working on
|
||||
single-cell transcriptomics data. _cellxgene_ is in active development, and we
|
||||
would love to include the community as we plan new features to work on. If you
|
||||
have questions of feedback about this roadmap, please submit an issue on
|
||||
GitHub.
|
||||
|
||||
Please note: this roadmap is subject to change.
|
||||
|
||||
*Last updated: April 11, 2019*
|
||||
|
||||
## what we are building now
|
||||
|
||||
In the near term, our goal is to enable teams of computational and experimental
|
||||
biologists to collaboratively explore and annotate their single-cell RNA-seq data.
|
||||
|
||||
There are 4 key features we plan to implement in the near term.
|
||||
|
||||
- Click install and launch
|
||||
- Manual annotation workflows
|
||||
- Toggle embeddings
|
||||
- Gene information
|
||||
|
||||
### simple install and launch
|
||||
|
||||
The command line interface for installing and launching cellxgene is a barrier
|
||||
for users who are not used to Python or using the command line. We plan to
|
||||
support installation and launch of cellxgene on Mac and Windows. See
|
||||
[Issue #687](https://github.com/chanzuckerberg/cellxgene/issues/687) for more details.
|
||||
|
||||
### manual annotation workflows
|
||||
|
||||
The exploratory visualization that cellxgene offers is critical for manual
|
||||
annotation workflows, especially in collaborative environments. We plan to
|
||||
support manually annotate cells with labels (i.e., cell type or QC flags) for
|
||||
downstream analysis. See [Issue #524](https://github.com/chanzuckerberg/cellxgene/issues/524)
|
||||
for more details.
|
||||
|
||||
### toggle embeddings
|
||||
|
||||
While a single dataset may have multiple embeddings calculated (tSNE, umap, in
|
||||
situ coordinates, trajectories, etc), cellxgene currently requires the user to select the
|
||||
embedding to use in the main layout at launch. We plan to support letting users
|
||||
toggle between any embedding present in a file from the cellxgene interface.
|
||||
See [Issue #594](https://github.com/chanzuckerberg/cellxgene/issues/594) for details.
|
||||
|
||||
### gene information
|
||||
|
||||
Differential expression returns only the names of genes, but no additional information
|
||||
about gene metadata, function, or known associations. We plan to help users learn
|
||||
more about genes they discover by exposing additional gene metadata. See
|
||||
[Issue #96](https://github.com/chanzuckerberg/cellxgene/issues/96) for details.
|
||||
Reference in New Issue
Block a user