fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-09-30 21:18:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

Add URL data locators to launch sub-command (#920)

Browse Source 
* initial commit of URL support for launch

* lint

* modify tests to use new data locator

* add locator unit tests

* fix typo in faq

* more lint

* update faq per PR review
This commit is contained in:
Bruce Martin
2019-09-15 09:01:53 -07:00
committed by GitHub
parent 0f520f2fd4
commit 20317fd08f
12 changed files with 196 additions and 26 deletions
Download Patch File Download Diff File Expand all files Collapse all files
server/test/test_nan_scanpy_engine.py
+3 -2
View File
@@ -7,6 +7,7 @@ import decode_fbs
from server.app.scanpy_engine.scanpy_engine import ScanpyEngine
from server.app.util.errors import FilterError
from server.app.util.data_locator import DataLocator
class NaNTest(unittest.TestCase):
@@ -20,12 +21,12 @@ class NaNTest(unittest.TestCase):
}
with warnings.catch_warnings():
warnings.simplefilter("ignore", category=UserWarning)
self.data = ScanpyEngine("server/test/test_datasets/nan.h5ad", self.args)
self.data = ScanpyEngine(DataLocator("server/test/test_datasets/nan.h5ad"), self.args)
self.data._create_schema()
def test_load(self):
with self.assertWarns(UserWarning):
ScanpyEngine("server/test/test_datasets/nan.h5ad", self.args)
ScanpyEngine(DataLocator("server/test/test_datasets/nan.h5ad"), self.args)
def test_init(self):
self.assertEqual(self.data.cell_count, 100)