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fix unit tests for gene set load routes

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This commit is contained in:
bkmartinjr
2021-06-17 08:06:42 -07:00
parent acc7436106
commit 2261d5e82c
2 changed files with 39 additions and 12 deletions
Download Patch File Download Diff File Expand all files Collapse all files
backend/test/test_czi_hosted/unit/common/test_api.py
+19 -4
View File
@@ -554,6 +554,23 @@ class EndPointsCxg(unittest.TestCase, EndPoints):
"geneset_description": "", "geneset_description": "",
"geneset_name": "summary test", "geneset_name": "summary test",
}, },
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_delete'},
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_edit'},
{
'genes': [{'gene_description': '', 'gene_symbol': 'RER1'}],
'geneset_description': '',
'geneset_name': 'fill_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'empty_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'brush_this_gene'
}
], ],
"tid": 0, "tid": 0,
}, },
@@ -569,14 +586,12 @@ class EndPointsCxg(unittest.TestCase, EndPoints):
result.text, result.text,
"""gene_set_name,gene_set_description,gene_symbol,gene_description\r """gene_set_name,gene_set_description,gene_symbol,gene_description\r
first gene set name,a description,F5, a gene_description\r first gene set name,a description,F5, a gene_description\r
first gene set name,a description,NO_SUCH_GENE, non-existent gene\r
first gene set name,a description,F5, duplicate gene\r
first gene set name,a description,SUMO3,\r first gene set name,a description,SUMO3,\r
first gene set name,a description,SRM,\r first gene set name,a description,SRM,\r
second_gene_set,,RER1,\r second_gene_set,,RER1,\r
second_gene_set,,SIK1,\r second_gene_set,,SIK1,\r
third gene set,,NO_SUCH_GENE,\r third gene set,,,\r
fourth_gene_set,fourth description,,gene intentionally missing\r fourth_gene_set,fourth description,,\r
fifth_dataset,,,\r fifth_dataset,,,\r
summary test,,ACD,\r summary test,,ACD,\r
summary test,,AATF,\r summary test,,AATF,\r
backend/test/test_server/unit/common/test_api.py
+20 -8
View File
@@ -575,7 +575,7 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
{"gene_description": "", "gene_symbol": "SIK1"}, {"gene_description": "", "gene_symbol": "SIK1"},
], ],
"geneset_description": "", "geneset_description": "",
"geneset_name": "second gene set", "geneset_name": "second_gene_set",
}, },
{"genes": [], "geneset_description": "", "geneset_name": "third gene set"}, {"genes": [], "geneset_description": "", "geneset_name": "third gene set"},
{"genes": [], "geneset_description": "fourth description", "geneset_name": "fourth_gene_set"}, {"genes": [], "geneset_description": "fourth description", "geneset_name": "fourth_gene_set"},
@@ -590,6 +590,23 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
"geneset_description": "", "geneset_description": "",
"geneset_name": "summary test", "geneset_name": "summary test",
}, },
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_delete'},
{'genes': [], 'geneset_description': '', 'geneset_name': 'geneset_to_edit'},
{
'genes': [{'gene_description': '', 'gene_symbol': 'RER1'}],
'geneset_description': '',
'geneset_name': 'fill_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'empty_this_geneset'
},
{
'genes': [{'gene_description': '', 'gene_symbol': 'SIK1'}],
'geneset_description': '',
'geneset_name': 'brush_this_gene'
}
], ],
"tid": 0, "tid": 0,
}, },
@@ -600,23 +617,18 @@ class EndPointsAnnDataGenesets(unittest.TestCase, EndPoints):
endpoint = "genesets" endpoint = "genesets"
url = f"{self.URL_BASE}{endpoint}" url = f"{self.URL_BASE}{endpoint}"
result = self.session.get(url, headers={"Accept": "text/csv"}) result = self.session.get(url, headers={"Accept": "text/csv"})
self.maxDiff=None
print(result.text)
self.assertEqual(result.status_code, HTTPStatus.OK) self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "text/csv") self.assertEqual(result.headers["Content-Type"], "text/csv")
self.assertEqual( self.assertEqual(
result.text, result.text,
"""gene_set_name,gene_set_description,gene_symbol,gene_description\r """gene_set_name,gene_set_description,gene_symbol,gene_description\r
first gene set name,a description,F5, a gene_description\r first gene set name,a description,F5, a gene_description\r
first gene set name,a description,NO_SUCH_GENE, non-existent gene\r
first gene set name,a description,F5, duplicate gene\r
first gene set name,a description,SUMO3,\r first gene set name,a description,SUMO3,\r
first gene set name,a description,SRM,\r first gene set name,a description,SRM,\r
second_gene_set,,RER1,\r second_gene_set,,RER1,\r
second_gene_set,,SIK1,\r second_gene_set,,SIK1,\r
third gene set,,NO_SUCH_GENE,\r third gene set,,,\r
fourth_gene_set,fourth description,,gene intentionally missing\r fourth_gene_set,fourth description,,\r
fifth_dataset,,,\r fifth_dataset,,,\r
summary test,,ACD,\r summary test,,ACD,\r
summary test,,AATF,\r summary test,,AATF,\r