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update deprecated Pandas API (#1021)

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* update use of deprecated API

* update pandas depencency
This commit is contained in:
Bruce Martin
2019-11-08 09:49:52 -08:00
committed by GitHub
parent cadf710bf8
commit 238b7420f7
2 changed files with 2 additions and 2 deletions
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server/app/util/fbs/matrix.py
+1 -1
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@@ -95,7 +95,7 @@ def serialize_typed_array(builder, source_array, encoding_info):
if MatrixProxy.ismatrixproxy(arr) or sparse.issparse(arr): if MatrixProxy.ismatrixproxy(arr) or sparse.issparse(arr):
arr = arr.toarray() arr = arr.toarray()
elif isinstance(arr, pd.Series): elif isinstance(arr, pd.Series):
arr = arr.get_values() arr = arr.to_numpy()
if arr.dtype != as_type: if arr.dtype != as_type:
arr = arr.astype(as_type) arr = arr.astype(as_type)
server/requirements.txt
+1 -1
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@@ -8,7 +8,7 @@ Flask-RESTful>=0.3.6
flatbuffers>=1.10.0 flatbuffers>=1.10.0
fsspec>=0.4.4 fsspec>=0.4.4
numpy>=1.15.2 numpy>=1.15.2
pandas>=0.23.1 pandas>=0.24.2
scipy>=1.3.0 scipy>=1.3.0
tables==3.5.1 tables==3.5.1
# TEMP workaround for https://github.com/theislab/scanpy/issues/832 aka h5py regression # TEMP workaround for https://github.com/theislab/scanpy/issues/832 aka h5py regression