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feat: diffexp returns two genesets (#2230)

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* feat: return two lists for diffexp (#2221)

* sp

* split out derive sort order, tests passing

* sp

* return diff exp results in two lists

* update

* copy implementation over to desktop

* add tests for two lists

* small fixes to complete backend implementation

* accept new diffexp response

* map diff exp response to genesets

* delete )

* name diffexp genesets with population names

* take constants out of state and allow width prop to override

* shorten mini-histo properly truncate and resize depending on expansion

* prepend new genesets

* rename data within diffexp action

* backend

* move diffexp ttest to common code module, update tests

* update for unit tests

* reference actual var

Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
Co-authored-by: Madison Dunitz <dunitzm@gmail.com>
This commit is contained in:
Severiano Badajoz
2021-06-08 21:02:19 +00:00
committed by GitHub
co-authored by Madison Dunitz Madison Dunitz
parent 7ed53c0f5b
commit 28b526b3fc
25 changed files with 268 additions and 284 deletions
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backend/test/test_czi_hosted/performance/run_diffexp.py
+2 -1
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@@ -5,7 +5,8 @@ import time
import numpy as np
from backend.czi_hosted.common.config.app_config import AppConfig
from backend.czi_hosted.compute import diffexp_generic, diffexp_cxg
from backend.czi_hosted.compute import diffexp_cxg
from backend.common.compute import diffexp_generic
from backend.czi_hosted.data_common.matrix_loader import MatrixDataLoader
from backend.czi_hosted.data_cxg.cxg_adaptor import CxgAdaptor