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feat: diffexp returns two genesets (#2230)

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* feat: return two lists for diffexp (#2221)

* sp

* split out derive sort order, tests passing

* sp

* return diff exp results in two lists

* update

* copy implementation over to desktop

* add tests for two lists

* small fixes to complete backend implementation

* accept new diffexp response

* map diff exp response to genesets

* delete )

* name diffexp genesets with population names

* take constants out of state and allow width prop to override

* shorten mini-histo properly truncate and resize depending on expansion

* prepend new genesets

* rename data within diffexp action

* backend

* move diffexp ttest to common code module, update tests

* update for unit tests

* reference actual var

Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
Co-authored-by: Madison Dunitz <dunitzm@gmail.com>
This commit is contained in:
Severiano Badajoz
2021-06-08 21:02:19 +00:00
committed by GitHub
co-authored by Madison Dunitz Madison Dunitz
parent 7ed53c0f5b
commit 28b526b3fc
25 changed files with 268 additions and 284 deletions
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backend/test/test_czi_hosted/unit/common/test_api.py
+5 -2
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@@ -158,7 +158,8 @@ class EndPoints(object):
self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "application/json")
result_data = result.json()
self.assertEqual(len(result_data), 7)
self.assertEqual(len(result_data['positive']), 7)
self.assertEqual(len(result_data['negative']), 7)
def test_diff_exp_indices(self):
endpoint = "diffexp/obs"
@@ -173,7 +174,8 @@ class EndPoints(object):
self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "application/json")
result_data = result.json()
self.assertEqual(len(result_data), 10)
self.assertEqual(len(result_data['positive']), 10)
self.assertEqual(len(result_data['negative']), 10)
def test_get_annotations_var_fbs(self):
endpoint = "annotations/var"
@@ -382,6 +384,7 @@ class EndPoints(object):
query_hash = hashlib.sha1(query.encode()).hexdigest()
url = f"{self.URL_BASE}{endpoint}?key={query_hash}"
result = self.session.post(url, headers=headers, data=query)
self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
df = decode_fbs.decode_matrix_FBS(result.content)